Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9714 | 5' | -57 | NC_002577.1 | + | 3615 | 0.69 | 0.781758 |
Target: 5'- aGCcgGGCGCgaaGCGGCUGGGAucgGGUCGc -3' miRNA: 3'- gCG--CCGCG---CGUUGGCCCUua-CUAGCc -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 5018 | 0.74 | 0.472537 |
Target: 5'- gGCGGUGUGCA--CGGGAGU-AUCGGg -3' miRNA: 3'- gCGCCGCGCGUugGCCCUUAcUAGCC- -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 8448 | 0.66 | 0.898256 |
Target: 5'- cCGCGGUGUGUguggggguGugUGGGggUGugugUGGg -3' miRNA: 3'- -GCGCCGCGCG--------UugGCCCuuACua--GCC- -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 8496 | 0.75 | 0.436722 |
Target: 5'- gGUGuGCGCGCGGCCGGGAcgGGa--- -3' miRNA: 3'- gCGC-CGCGCGUUGGCCCUuaCUagcc -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 9082 | 0.73 | 0.557936 |
Target: 5'- gGCGaCGgGCGACCGGGAAUGcgUGc -3' miRNA: 3'- gCGCcGCgCGUUGGCCCUUACuaGCc -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 9616 | 0.7 | 0.716123 |
Target: 5'- cCGCGGUGCGUAccuGCaCGGGAuuccgGAUCc- -3' miRNA: 3'- -GCGCCGCGCGU---UG-GCCCUua---CUAGcc -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 10522 | 0.77 | 0.370066 |
Target: 5'- cCGCgGGUGCGgGGCCGGGGGgaaaGUCGGg -3' miRNA: 3'- -GCG-CCGCGCgUUGGCCCUUac--UAGCC- -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 10690 | 0.66 | 0.904445 |
Target: 5'- cCGCGGCGagguCGgAACCucGGGAAUcGAUUGa -3' miRNA: 3'- -GCGCCGC----GCgUUGG--CCCUUA-CUAGCc -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 11111 | 0.66 | 0.916155 |
Target: 5'- cCGCGGUaauaaaGCGCccGCCGucGcgGAUCGGa -3' miRNA: 3'- -GCGCCG------CGCGu-UGGCccUuaCUAGCC- -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 11574 | 0.67 | 0.878386 |
Target: 5'- cCGCGGCGUcCGAuCCGGGAucgcucccGA-CGGg -3' miRNA: 3'- -GCGCCGCGcGUU-GGCCCUua------CUaGCC- -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 11696 | 0.69 | 0.781758 |
Target: 5'- uGCGGaGCGCGagagcggaGCCGGGGAcgGAggGGg -3' miRNA: 3'- gCGCCgCGCGU--------UGGCCCUUa-CUagCC- -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 17577 | 0.68 | 0.808148 |
Target: 5'- aGUGGCGCGaAACgGGcGGAgguccGAUCGGc -3' miRNA: 3'- gCGCCGCGCgUUGgCC-CUUa----CUAGCC- -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 19089 | 0.7 | 0.744831 |
Target: 5'- aGCGGCGagaaGCucacgAGCCGGGAGUG-UCu- -3' miRNA: 3'- gCGCCGCg---CG-----UUGGCCCUUACuAGcc -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 26710 | 1.11 | 0.002161 |
Target: 5'- cCGCGGCGCGCAACCGGGAAUGAUCGGg -3' miRNA: 3'- -GCGCCGCGCGUUGGCCCUUACUAGCC- -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 55011 | 0.74 | 0.500344 |
Target: 5'- aGgGGCGCuGCGAauUCGGGAGUGGcguUCGGu -3' miRNA: 3'- gCgCCGCG-CGUU--GGCCCUUACU---AGCC- -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 65321 | 0.67 | 0.874184 |
Target: 5'- gGCGGCGCGUAcuggacuugcaaaacGCCGGGuuc-AUCa- -3' miRNA: 3'- gCGCCGCGCGU---------------UGGCCCuuacUAGcc -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 81262 | 0.67 | 0.871341 |
Target: 5'- cCGCGGgcgugGCGCAGCaCGGGGAccguuuagaUGGUCu- -3' miRNA: 3'- -GCGCCg----CGCGUUG-GCCCUU---------ACUAGcc -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 88925 | 0.66 | 0.898256 |
Target: 5'- aGCGGUGUauguuuGCc-CCGGGAggGGUCGu -3' miRNA: 3'- gCGCCGCG------CGuuGGCCCUuaCUAGCc -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 103138 | 0.67 | 0.854375 |
Target: 5'- aGCGGCGUGCAgaucguggugacgcGCCGu--AUGggCGGg -3' miRNA: 3'- gCGCCGCGCGU--------------UGGCccuUACuaGCC- -5' |
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9714 | 5' | -57 | NC_002577.1 | + | 103709 | 0.68 | 0.808148 |
Target: 5'- gGgGGCGCGCcGCUaGGGGAgacuuucGUCGGg -3' miRNA: 3'- gCgCCGCGCGuUGG-CCCUUac-----UAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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