miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9714 5' -57 NC_002577.1 + 26710 1.11 0.002161
Target:  5'- cCGCGGCGCGCAACCGGGAAUGAUCGGg -3'
miRNA:   3'- -GCGCCGCGCGUUGGCCCUUACUAGCC- -5'
9714 5' -57 NC_002577.1 + 140780 0.66 0.891847
Target:  5'- aGCGGCGUGCAggcGCCGGuGGGcuuacaGGg -3'
miRNA:   3'- gCGCCGCGCGU---UGGCC-CUUacuag-CC- -5'
9714 5' -57 NC_002577.1 + 8448 0.66 0.898256
Target:  5'- cCGCGGUGUGUguggggguGugUGGGggUGugugUGGg -3'
miRNA:   3'- -GCGCCGCGCG--------UugGCCCuuACua--GCC- -5'
9714 5' -57 NC_002577.1 + 122503 0.66 0.916155
Target:  5'- cCGCGGUaauaaaGCGCccGCCGucGcgGAUCGGa -3'
miRNA:   3'- -GCGCCG------CGCGu-UGGCccUuaCUAGCC- -5'
9714 5' -57 NC_002577.1 + 128596 0.74 0.472537
Target:  5'- gGCGGUGUGCA--CGGGAGU-AUCGGg -3'
miRNA:   3'- gCGCCGCGCGUugGCCCUUAcUAGCC- -5'
9714 5' -57 NC_002577.1 + 55011 0.74 0.500344
Target:  5'- aGgGGCGCuGCGAauUCGGGAGUGGcguUCGGu -3'
miRNA:   3'- gCgCCGCG-CGUU--GGCCCUUACU---AGCC- -5'
9714 5' -57 NC_002577.1 + 9616 0.7 0.716123
Target:  5'- cCGCGGUGCGUAccuGCaCGGGAuuccgGAUCc- -3'
miRNA:   3'- -GCGCCGCGCGU---UG-GCCCUua---CUAGcc -5'
9714 5' -57 NC_002577.1 + 139363 0.7 0.735344
Target:  5'- gGCGGCGCGCAcGCCGGaAAgca-CGGc -3'
miRNA:   3'- gCGCCGCGCGU-UGGCCcUUacuaGCC- -5'
9714 5' -57 NC_002577.1 + 136954 0.69 0.763516
Target:  5'- cCGCGGaGCGCGACCGGccc---UCGGa -3'
miRNA:   3'- -GCGCCgCGCGUUGGCCcuuacuAGCC- -5'
9714 5' -57 NC_002577.1 + 122040 0.67 0.878386
Target:  5'- cCGCGGCGUcCGAuCCGGGAucgcucccGA-CGGg -3'
miRNA:   3'- -GCGCCGCGcGUU-GGCCCUua------CUaGCC- -5'
9714 5' -57 NC_002577.1 + 139007 0.68 0.816652
Target:  5'- cCGCGGaaaGCGCGGgaGGGAgcgcgGUGG-CGGg -3'
miRNA:   3'- -GCGCCg--CGCGUUggCCCU-----UACUaGCC- -5'
9714 5' -57 NC_002577.1 + 129998 0.69 0.763516
Target:  5'- aGCcgGGCGCgaaGCGGCUGGGAAUcgGGUCGc -3'
miRNA:   3'- gCG--CCGCG---CGUUGGCCCUUA--CUAGCc -5'
9714 5' -57 NC_002577.1 + 10522 0.77 0.370066
Target:  5'- cCGCgGGUGCGgGGCCGGGGGgaaaGUCGGg -3'
miRNA:   3'- -GCG-CCGCGCgUUGGCCCUUac--UAGCC- -5'
9714 5' -57 NC_002577.1 + 134057 0.67 0.848233
Target:  5'- gGCGGCcuagcgagcgcccGCGCGGCCGGcGGgcAUGuccggCGGg -3'
miRNA:   3'- gCGCCG-------------CGCGUUGGCC-CU--UACua---GCC- -5'
9714 5' -57 NC_002577.1 + 8496 0.75 0.436722
Target:  5'- gGUGuGCGCGCGGCCGGGAcgGGa--- -3'
miRNA:   3'- gCGC-CGCGCGUUGGCCCUuaCUagcc -5'
9714 5' -57 NC_002577.1 + 107048 0.69 0.754224
Target:  5'- uCGuCGGaGCGCGACCGGGggUuuUUGa -3'
miRNA:   3'- -GC-GCCgCGCGUUGGCCCuuAcuAGCc -5'
9714 5' -57 NC_002577.1 + 138245 0.67 0.856647
Target:  5'- gGCGGCGCaGCAGuuuCCGaGGAcgGUGAU-GGc -3'
miRNA:   3'- gCGCCGCG-CGUU---GGC-CCU--UACUAgCC- -5'
9714 5' -57 NC_002577.1 + 143946 0.66 0.898256
Target:  5'- gCGCGGa--GCAAUCGGGGggGGggGGg -3'
miRNA:   3'- -GCGCCgcgCGUUGGCCCUuaCUagCC- -5'
9714 5' -57 NC_002577.1 + 158852 0.75 0.454438
Target:  5'- cCGCGGC-CGCGGCCGcGGAGgacgGcgCGGc -3'
miRNA:   3'- -GCGCCGcGCGUUGGC-CCUUa---CuaGCC- -5'
9714 5' -57 NC_002577.1 + 124532 0.73 0.557936
Target:  5'- gGCGaCGgGCGACCGGGAAUGcgUGc -3'
miRNA:   3'- gCGCcGCgCGUUGGCCCUUACuaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.