Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9715 | 3' | -55 | NC_002577.1 | + | 51327 | 0.66 | 0.937881 |
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Target: 5'- -uGC-CCCGagCACGGAccCCGGCACg- -3' miRNA: 3'- uuUGaGGGCa-GUGUCUa-GGCCGUGac -5' |
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| 9715 | 3' | -55 | NC_002577.1 | + | 56471 | 0.66 | 0.932901 |
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Target: 5'- gGAACUguaCCGUCGgAGccguUCUGGCACUa -3' miRNA: 3'- -UUUGAg--GGCAGUgUCu---AGGCCGUGAc -5' |
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| 9715 | 3' | -55 | NC_002577.1 | + | 74410 | 0.67 | 0.910537 |
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Target: 5'- --uUUCCgGUCGCGu-UCCGGCACg- -3' miRNA: 3'- uuuGAGGgCAGUGUcuAGGCCGUGac -5' |
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| 9715 | 3' | -55 | NC_002577.1 | + | 74312 | 0.69 | 0.803633 |
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Target: 5'- aAAACggCCCcaugGUCACAGAcacgCuCGGCACUGa -3' miRNA: 3'- -UUUGa-GGG----CAGUGUCUa---G-GCCGUGAC- -5' |
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| 9715 | 3' | -55 | NC_002577.1 | + | 45610 | 0.7 | 0.756852 |
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Target: 5'- uAGCUCCCGUgGCGGGaacCCGcGCACa- -3' miRNA: 3'- uUUGAGGGCAgUGUCUa--GGC-CGUGac -5' |
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| 9715 | 3' | -55 | NC_002577.1 | + | 141292 | 0.8 | 0.247435 |
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Target: 5'- cGGCUCCCGUCGCGGGcagccuugCCGGCGCa- -3' miRNA: 3'- uUUGAGGGCAGUGUCUa-------GGCCGUGac -5' |
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| 9715 | 3' | -55 | NC_002577.1 | + | 156046 | 0.8 | 0.247435 |
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Target: 5'- cGGCUCCCGUCGCGGGcagccuugCCGGCGCa- -3' miRNA: 3'- uUUGAGGGCAGUGUCUa-------GGCCGUGac -5' |
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| 9715 | 3' | -55 | NC_002577.1 | + | 53385 | 0.82 | 0.203043 |
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Target: 5'- -uACUCCCGUCGCAGAguggCuCGGCACUu -3' miRNA: 3'- uuUGAGGGCAGUGUCUa---G-GCCGUGAc -5' |
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| 9715 | 3' | -55 | NC_002577.1 | + | 27770 | 1.07 | 0.004789 |
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Target: 5'- cAAACUCCCGUCACAGAUCCGGCACUGg -3' miRNA: 3'- -UUUGAGGGCAGUGUCUAGGCCGUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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