miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9715 5' -52.8 NC_002577.1 + 138494 0.66 0.981649
Target:  5'- uGCCAGagGCCGCGgccgCGGccGCgGAGg- -3'
miRNA:   3'- -CGGUCa-CGGCGCa---GCCaaUGaCUUag -5'
9715 5' -52.8 NC_002577.1 + 158843 0.66 0.981649
Target:  5'- uGCCAGagGCCGCGgccgCGGccGCgGAGg- -3'
miRNA:   3'- -CGGUCa-CGGCGCa---GCCaaUGaCUUag -5'
9715 5' -52.8 NC_002577.1 + 102325 0.66 0.974858
Target:  5'- cGCCuAGUGCCGauaCGUCGauacgcuugcaacuaUUGCUGAGUUa -3'
miRNA:   3'- -CGG-UCACGGC---GCAGCc--------------AAUGACUUAG- -5'
9715 5' -52.8 NC_002577.1 + 1192 0.67 0.968907
Target:  5'- aGCCGGUGUgGCGgacUCGGccAUgGAAUCu -3'
miRNA:   3'- -CGGUCACGgCGC---AGCCaaUGaCUUAG- -5'
9715 5' -52.8 NC_002577.1 + 54574 0.67 0.968907
Target:  5'- --gGGUGCCGUugauuUCGGUUACUGcuUCc -3'
miRNA:   3'- cggUCACGGCGc----AGCCAAUGACuuAG- -5'
9715 5' -52.8 NC_002577.1 + 132422 0.67 0.968907
Target:  5'- aGCCGGUGUgGCGgacUCGGccAUgGAAUCu -3'
miRNA:   3'- -CGGUCACGgCGC---AGCCaaUGaCUUAG- -5'
9715 5' -52.8 NC_002577.1 + 19527 0.67 0.965746
Target:  5'- cGCCAcuugcaugcuGUGUCGCGgacgCGGUcgaugUGCUcGAAUCc -3'
miRNA:   3'- -CGGU----------CACGGCGCa---GCCA-----AUGA-CUUAG- -5'
9715 5' -52.8 NC_002577.1 + 104325 0.68 0.950855
Target:  5'- uGCCcugaggAGUGCCGUaguGUCuGGcgaGCUGAAUCa -3'
miRNA:   3'- -CGG------UCACGGCG---CAG-CCaa-UGACUUAG- -5'
9715 5' -52.8 NC_002577.1 + 58977 0.7 0.883014
Target:  5'- cGCCGGUGCCGUGgUGGcUACcGuAUCu -3'
miRNA:   3'- -CGGUCACGGCGCaGCCaAUGaCuUAG- -5'
9715 5' -52.8 NC_002577.1 + 27805 1.11 0.004366
Target:  5'- cGCCAGUGCCGCGUCGGUUACUGAAUCc -3'
miRNA:   3'- -CGGUCACGGCGCAGCCAAUGACUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.