miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9716 3' -54.6 NC_002577.1 + 86888 0.66 0.956906
Target:  5'- gGCGAu-GUAUACCGCCAaAUccccaCGAGGa -3'
miRNA:   3'- aCGCUccCGUAUGGCGGUaUA-----GCUCC- -5'
9716 3' -54.6 NC_002577.1 + 95951 0.66 0.956906
Target:  5'- -cCGAGGGgA-ACCGCCGUcgCGAc- -3'
miRNA:   3'- acGCUCCCgUaUGGCGGUAuaGCUcc -5'
9716 3' -54.6 NC_002577.1 + 122741 0.66 0.956528
Target:  5'- cGCGAcccucgcGGGUccggaACCGUCGgacGUCGAGGg -3'
miRNA:   3'- aCGCU-------CCCGua---UGGCGGUa--UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 130830 0.66 0.95302
Target:  5'- uUGUGGuGGGCGUgACCGCgCAUcgcAUCGAa- -3'
miRNA:   3'- -ACGCU-CCCGUA-UGGCG-GUA---UAGCUcc -5'
9716 3' -54.6 NC_002577.1 + 58240 0.66 0.95302
Target:  5'- gGC-AGGGgAU-CCGCUAUGUCGAc- -3'
miRNA:   3'- aCGcUCCCgUAuGGCGGUAUAGCUcc -5'
9716 3' -54.6 NC_002577.1 + 2783 0.66 0.95302
Target:  5'- uUGUGGuGGGCGUgACCGCgCAUcgcAUCGAa- -3'
miRNA:   3'- -ACGCU-CCCGUA-UGGCG-GUA---UAGCUcc -5'
9716 3' -54.6 NC_002577.1 + 132959 0.66 0.948905
Target:  5'- gGuCGGGGGUucgGCCuGUCAUcacgGUCGGGGu -3'
miRNA:   3'- aC-GCUCCCGua-UGG-CGGUA----UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 654 0.66 0.948905
Target:  5'- gGuCGGGGGUucgGCCuGUCAUcacgGUCGGGGu -3'
miRNA:   3'- aC-GCUCCCGua-UGG-CGGUA----UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 64118 0.66 0.944109
Target:  5'- aUGCGAGGGCGguuggagugucgaUGCUGCCg---CGAu- -3'
miRNA:   3'- -ACGCUCCCGU-------------AUGGCGGuauaGCUcc -5'
9716 3' -54.6 NC_002577.1 + 10574 0.67 0.939502
Target:  5'- cGCGAGcGGCGUuCgGCCGcGUCGccgacgcGGGg -3'
miRNA:   3'- aCGCUC-CCGUAuGgCGGUaUAGC-------UCC- -5'
9716 3' -54.6 NC_002577.1 + 123040 0.67 0.939502
Target:  5'- cGCGAGcGGCGUuCgGCCGcGUCGccgacgcGGGg -3'
miRNA:   3'- aCGCUC-CCGUAuGgCGGUaUAGC-------UCC- -5'
9716 3' -54.6 NC_002577.1 + 121939 0.67 0.938552
Target:  5'- aGCGGGGGaggcgccguccgagGCCGCCGggGagGAGGu -3'
miRNA:   3'- aCGCUCCCgua-----------UGGCGGUa-UagCUCC- -5'
9716 3' -54.6 NC_002577.1 + 11674 0.67 0.938552
Target:  5'- aGCGGGGGaggcgccguccgagGCCGCCGggGagGAGGu -3'
miRNA:   3'- aCGCUCCCgua-----------UGGCGGUa-UagCUCC- -5'
9716 3' -54.6 NC_002577.1 + 52246 0.67 0.935153
Target:  5'- aGCGcuagcaguaauaAGGuGCAUACCGCCAUucCGAu- -3'
miRNA:   3'- aCGC------------UCC-CGUAUGGCGGUAuaGCUcc -5'
9716 3' -54.6 NC_002577.1 + 29674 0.67 0.926943
Target:  5'- -aUGAGGcagaaGCGUGCCGCCGcUuccgagaaugaaauuGUCGAGGa -3'
miRNA:   3'- acGCUCC-----CGUAUGGCGGU-A---------------UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 10873 0.68 0.907465
Target:  5'- cGCGAcccucGcGGCGUccggaACCGUCGgacGUCGAGGg -3'
miRNA:   3'- aCGCU-----C-CCGUA-----UGGCGGUa--UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 60235 0.68 0.888018
Target:  5'- gGCG-GGGCGa--CGCCAUAaaaCGGGGa -3'
miRNA:   3'- aCGCuCCCGUaugGCGGUAUa--GCUCC- -5'
9716 3' -54.6 NC_002577.1 + 41689 0.68 0.881078
Target:  5'- cGCGuGGGCAgauauauaUACCGCCAUuacCaAGGc -3'
miRNA:   3'- aCGCuCCCGU--------AUGGCGGUAua-GcUCC- -5'
9716 3' -54.6 NC_002577.1 + 96454 0.68 0.881078
Target:  5'- aGaCGAGGGCAgacgagACCGCa--GUCGuGGc -3'
miRNA:   3'- aC-GCUCCCGUa-----UGGCGguaUAGCuCC- -5'
9716 3' -54.6 NC_002577.1 + 86799 0.69 0.873918
Target:  5'- aGCG-GGGCcgggACUGCCA-AUCGAGc -3'
miRNA:   3'- aCGCuCCCGua--UGGCGGUaUAGCUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.