miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9716 3' -54.6 NC_002577.1 + 33133 1.11 0.00306
Target:  5'- cUGCGAGGGCAUACCGCCAUAUCGAGGg -3'
miRNA:   3'- -ACGCUCCCGUAUGGCGGUAUAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 132038 0.75 0.522459
Target:  5'- gGUcAGGGCGUGCCGCgG-AUUGAGGg -3'
miRNA:   3'- aCGcUCCCGUAUGGCGgUaUAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 1576 0.75 0.522459
Target:  5'- gGUcAGGGCGUGCCGCgG-AUUGAGGg -3'
miRNA:   3'- aCGcUCCCGUAUGGCGgUaUAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 162592 0.74 0.592684
Target:  5'- cGCGGuuucgguucccGGGCAgACCGCC--GUCGGGGa -3'
miRNA:   3'- aCGCU-----------CCCGUaUGGCGGuaUAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 134736 0.74 0.592684
Target:  5'- cGCGGuuucgguucccGGGCAgACCGCC--GUCGGGGa -3'
miRNA:   3'- aCGCU-----------CCCGUaUGGCGGuaUAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 136422 0.72 0.704785
Target:  5'- gUGCGAGGGaGUGCuCGCCAcg-CGAGc -3'
miRNA:   3'- -ACGCUCCCgUAUG-GCGGUauaGCUCc -5'
9716 3' -54.6 NC_002577.1 + 160916 0.72 0.704785
Target:  5'- gUGCGAGGGaGUGCuCGCCAcg-CGAGc -3'
miRNA:   3'- -ACGCUCCCgUAUG-GCGGUauaGCUCc -5'
9716 3' -54.6 NC_002577.1 + 156186 0.72 0.724708
Target:  5'- gGCGGgacGGGC-UGCCGaCCGggcGUCGGGGg -3'
miRNA:   3'- aCGCU---CCCGuAUGGC-GGUa--UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 141152 0.72 0.724708
Target:  5'- gGCGGgacGGGC-UGCCGaCCGggcGUCGGGGg -3'
miRNA:   3'- aCGCU---CCCGuAUGGC-GGUa--UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 103711 0.7 0.807583
Target:  5'- -cCGGGGGCGcGCCGCUAggggagacuuucGUCGGGGc -3'
miRNA:   3'- acGCUCCCGUaUGGCGGUa-----------UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 135841 0.7 0.818062
Target:  5'- cGCGAGGuuAUgACCGUCGUAgcuagaUCGGGGu -3'
miRNA:   3'- aCGCUCCcgUA-UGGCGGUAU------AGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 161496 0.69 0.834979
Target:  5'- cGCGAGGuuAUgACCGUCGUAgcuagaUCGGGGc -3'
miRNA:   3'- aCGCUCCcgUA-UGGCGGUAU------AGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 86799 0.69 0.873918
Target:  5'- aGCG-GGGCcgggACUGCCA-AUCGAGc -3'
miRNA:   3'- aCGCuCCCGua--UGGCGGUaUAGCUCc -5'
9716 3' -54.6 NC_002577.1 + 124453 0.69 0.873918
Target:  5'- gGCGGGGGagu-CCGUCGcguaaGUCGGGGa -3'
miRNA:   3'- aCGCUCCCguauGGCGGUa----UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 9161 0.69 0.873918
Target:  5'- gGCGGGGGagu-CCGUCGcguaaGUCGGGGa -3'
miRNA:   3'- aCGCUCCCguauGGCGGUa----UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 41689 0.68 0.881078
Target:  5'- cGCGuGGGCAgauauauaUACCGCCAUuacCaAGGc -3'
miRNA:   3'- aCGCuCCCGU--------AUGGCGGUAua-GcUCC- -5'
9716 3' -54.6 NC_002577.1 + 96454 0.68 0.881078
Target:  5'- aGaCGAGGGCAgacgagACCGCa--GUCGuGGc -3'
miRNA:   3'- aC-GCUCCCGUa-----UGGCGguaUAGCuCC- -5'
9716 3' -54.6 NC_002577.1 + 60235 0.68 0.888018
Target:  5'- gGCG-GGGCGa--CGCCAUAaaaCGGGGa -3'
miRNA:   3'- aCGCuCCCGUaugGCGGUAUa--GCUCC- -5'
9716 3' -54.6 NC_002577.1 + 10873 0.68 0.907465
Target:  5'- cGCGAcccucGcGGCGUccggaACCGUCGgacGUCGAGGg -3'
miRNA:   3'- aCGCU-----C-CCGUA-----UGGCGGUa--UAGCUCC- -5'
9716 3' -54.6 NC_002577.1 + 29674 0.67 0.926943
Target:  5'- -aUGAGGcagaaGCGUGCCGCCGcUuccgagaaugaaauuGUCGAGGa -3'
miRNA:   3'- acGCUCC-----CGUAUGGCGGU-A---------------UAGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.