Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9716 | 3' | -54.6 | NC_002577.1 | + | 86799 | 0.69 | 0.873918 |
Target: 5'- aGCG-GGGCcgggACUGCCA-AUCGAGc -3' miRNA: 3'- aCGCuCCCGua--UGGCGGUaUAGCUCc -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 9161 | 0.69 | 0.873918 |
Target: 5'- gGCGGGGGagu-CCGUCGcguaaGUCGGGGa -3' miRNA: 3'- aCGCUCCCguauGGCGGUa----UAGCUCC- -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 161496 | 0.69 | 0.834979 |
Target: 5'- cGCGAGGuuAUgACCGUCGUAgcuagaUCGGGGc -3' miRNA: 3'- aCGCUCCcgUA-UGGCGGUAU------AGCUCC- -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 135841 | 0.7 | 0.818062 |
Target: 5'- cGCGAGGuuAUgACCGUCGUAgcuagaUCGGGGu -3' miRNA: 3'- aCGCUCCcgUA-UGGCGGUAU------AGCUCC- -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 103711 | 0.7 | 0.807583 |
Target: 5'- -cCGGGGGCGcGCCGCUAggggagacuuucGUCGGGGc -3' miRNA: 3'- acGCUCCCGUaUGGCGGUa-----------UAGCUCC- -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 141152 | 0.72 | 0.724708 |
Target: 5'- gGCGGgacGGGC-UGCCGaCCGggcGUCGGGGg -3' miRNA: 3'- aCGCU---CCCGuAUGGC-GGUa--UAGCUCC- -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 156186 | 0.72 | 0.724708 |
Target: 5'- gGCGGgacGGGC-UGCCGaCCGggcGUCGGGGg -3' miRNA: 3'- aCGCU---CCCGuAUGGC-GGUa--UAGCUCC- -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 160916 | 0.72 | 0.704785 |
Target: 5'- gUGCGAGGGaGUGCuCGCCAcg-CGAGc -3' miRNA: 3'- -ACGCUCCCgUAUG-GCGGUauaGCUCc -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 136422 | 0.72 | 0.704785 |
Target: 5'- gUGCGAGGGaGUGCuCGCCAcg-CGAGc -3' miRNA: 3'- -ACGCUCCCgUAUG-GCGGUauaGCUCc -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 134736 | 0.74 | 0.592684 |
Target: 5'- cGCGGuuucgguucccGGGCAgACCGCC--GUCGGGGa -3' miRNA: 3'- aCGCU-----------CCCGUaUGGCGGuaUAGCUCC- -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 162592 | 0.74 | 0.592684 |
Target: 5'- cGCGGuuucgguucccGGGCAgACCGCC--GUCGGGGa -3' miRNA: 3'- aCGCU-----------CCCGUaUGGCGGuaUAGCUCC- -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 132038 | 0.75 | 0.522459 |
Target: 5'- gGUcAGGGCGUGCCGCgG-AUUGAGGg -3' miRNA: 3'- aCGcUCCCGUAUGGCGgUaUAGCUCC- -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 1576 | 0.75 | 0.522459 |
Target: 5'- gGUcAGGGCGUGCCGCgG-AUUGAGGg -3' miRNA: 3'- aCGcUCCCGUAUGGCGgUaUAGCUCC- -5' |
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9716 | 3' | -54.6 | NC_002577.1 | + | 33133 | 1.11 | 0.00306 |
Target: 5'- cUGCGAGGGCAUACCGCCAUAUCGAGGg -3' miRNA: 3'- -ACGCUCCCGUAUGGCGGUAUAGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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