Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9717 | 3' | -52.8 | NC_002577.1 | + | 163194 | 0.66 | 0.980033 |
Target: 5'- gGCGGACC-CUaGCGAGCAUGcgcgcggcggacccuGGCCa- -3' miRNA: 3'- gUGCCUGGaGA-CGUUUGUGU---------------UCGGac -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 158998 | 0.66 | 0.974119 |
Target: 5'- -uCGGGCCUCUcgGCGGACACcgacAGGCgCUc -3' miRNA: 3'- guGCCUGGAGA--CGUUUGUG----UUCG-GAc -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 26106 | 0.66 | 0.971312 |
Target: 5'- cCGCGGGCUUCgaaagccGCGGuCACGAGCUc- -3' miRNA: 3'- -GUGCCUGGAGa------CGUUuGUGUUCGGac -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 152729 | 0.67 | 0.961592 |
Target: 5'- -cCGGGCCg--GgGGACGCGGGUCUGu -3' miRNA: 3'- guGCCUGGagaCgUUUGUGUUCGGAC- -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 10779 | 0.67 | 0.945382 |
Target: 5'- gGC-GACCcCcGCGAACGCGAGCCg- -3' miRNA: 3'- gUGcCUGGaGaCGUUUGUGUUCGGac -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 127863 | 0.69 | 0.913642 |
Target: 5'- aCACGauGGCCUUUGgAAACGCAuccAGUCUGu -3' miRNA: 3'- -GUGC--CUGGAGACgUUUGUGU---UCGGAC- -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 68131 | 0.69 | 0.901055 |
Target: 5'- cCGCGGACUcgCUGagcaGAugGCGAGCgUGg -3' miRNA: 3'- -GUGCCUGGa-GACg---UUugUGUUCGgAC- -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 58501 | 0.7 | 0.880343 |
Target: 5'- gGCGuuCCUCUGCGGACAcCAAcGCCa- -3' miRNA: 3'- gUGCcuGGAGACGUUUGU-GUU-CGGac -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 106644 | 0.72 | 0.768757 |
Target: 5'- gACGGGcCCUCUGUAAaauccaguucguGCAaGAGCCUGu -3' miRNA: 3'- gUGCCU-GGAGACGUU------------UGUgUUCGGAC- -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 37268 | 1.08 | 0.006398 |
Target: 5'- aCACGGACCUCUGCAAACACAAGCCUGc -3' miRNA: 3'- -GUGCCUGGAGACGUUUGUGUUCGGAC- -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 5750 | 0.69 | 0.913642 |
Target: 5'- aCACGauGGCCUUUGgAAACGCAuccAGUCUGu -3' miRNA: 3'- -GUGC--CUGGAGACgUUUGUGU---UCGGAC- -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 47492 | 0.68 | 0.94072 |
Target: 5'- aCugGGAuuucuccucCCUCguuUGUGGACACGAGCaCUGa -3' miRNA: 3'- -GugCCU---------GGAG---ACGUUUGUGUUCG-GAC- -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 122835 | 0.67 | 0.945382 |
Target: 5'- gGC-GACCcCcGCGAACGCGAGCCg- -3' miRNA: 3'- gUGcCUGGaGaCGUUUGUGUUCGGac -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 79754 | 0.67 | 0.965055 |
Target: 5'- aGCGGAUcgaugCUCUcGCGGACuuaGCGAGCCg- -3' miRNA: 3'- gUGCCUG-----GAGA-CGUUUG---UGUUCGGac -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 23581 | 0.66 | 0.97672 |
Target: 5'- aGCGcGAUCUCUGCAGuugcuauccgGCcCGAcGCCUGc -3' miRNA: 3'- gUGC-CUGGAGACGUU----------UGuGUU-CGGAC- -5' |
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9717 | 3' | -52.8 | NC_002577.1 | + | 134134 | 0.66 | 0.980033 |
Target: 5'- gGCGGACC-CUaGCGAGCAUGcgcgcggcggacccuGGCCa- -3' miRNA: 3'- gUGCCUGGaGA-CGUUUGUGU---------------UCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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