miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9717 5' -47.4 NC_002577.1 + 159991 0.66 0.999903
Target:  5'- gCCCGUcCUCGCaagACGAcaGCAuuUCCGCg -3'
miRNA:   3'- aGGGUA-GAGUGcaaUGUU--UGU--AGGUG- -5'
9717 5' -47.4 NC_002577.1 + 137423 0.66 0.999903
Target:  5'- cCCCucgcaCUCcaGCGc-GCAAGCGUCCACc -3'
miRNA:   3'- aGGGua---GAG--UGCaaUGUUUGUAGGUG- -5'
9717 5' -47.4 NC_002577.1 + 137347 0.66 0.999903
Target:  5'- gCCCGUcCUCGCaagACGAcaGCAuuUCCGCg -3'
miRNA:   3'- aGGGUA-GAGUGcaaUGUU--UGU--AGGUG- -5'
9717 5' -47.4 NC_002577.1 + 159915 0.66 0.999903
Target:  5'- cCCCucgcaCUCcaGCGc-GCAAGCGUCCACc -3'
miRNA:   3'- aGGGua---GAG--UGCaaUGUUUGUAGGUG- -5'
9717 5' -47.4 NC_002577.1 + 145722 0.66 0.999903
Target:  5'- cCCCAUCgUCugGagGCGAAgAUUCAg -3'
miRNA:   3'- aGGGUAG-AGugCaaUGUUUgUAGGUg -5'
9717 5' -47.4 NC_002577.1 + 77679 0.66 0.999873
Target:  5'- gUCCCAUCUCAUagccucCAAGCcccuuucuUCCGCu -3'
miRNA:   3'- -AGGGUAGAGUGcaau--GUUUGu-------AGGUG- -5'
9717 5' -47.4 NC_002577.1 + 150991 0.66 0.999873
Target:  5'- aUCCCAgaauuUCUgACaccggUACAuauuACAUCCGCg -3'
miRNA:   3'- -AGGGU-----AGAgUGca---AUGUu---UGUAGGUG- -5'
9717 5' -47.4 NC_002577.1 + 91969 0.66 0.999831
Target:  5'- gCCCAguUCguaGCGUUgaugccgACAGccGCAUCCGCa -3'
miRNA:   3'- aGGGU--AGag-UGCAA-------UGUU--UGUAGGUG- -5'
9717 5' -47.4 NC_002577.1 + 39830 0.66 0.999788
Target:  5'- cCCUAUCcugUACGUUaaaGCGAAUAgCCACg -3'
miRNA:   3'- aGGGUAGa--GUGCAA---UGUUUGUaGGUG- -5'
9717 5' -47.4 NC_002577.1 + 82529 0.67 0.999656
Target:  5'- cCCCAUCUguCGUUACAcAGCGcUUgACu -3'
miRNA:   3'- aGGGUAGAguGCAAUGU-UUGU-AGgUG- -5'
9717 5' -47.4 NC_002577.1 + 156392 0.67 0.999324
Target:  5'- -gCCGUUUCGuuuccACAGACGUCCACg -3'
miRNA:   3'- agGGUAGAGUgcaa-UGUUUGUAGGUG- -5'
9717 5' -47.4 NC_002577.1 + 140945 0.67 0.999324
Target:  5'- -gCCGUUUCGuuuccACAGACGUCCACg -3'
miRNA:   3'- agGGUAGAGUgcaa-UGUUUGUAGGUG- -5'
9717 5' -47.4 NC_002577.1 + 100387 0.67 0.999164
Target:  5'- aCCaCAUCUgaGCGacACAAACGUUCGCg -3'
miRNA:   3'- aGG-GUAGAg-UGCaaUGUUUGUAGGUG- -5'
9717 5' -47.4 NC_002577.1 + 32767 0.68 0.998973
Target:  5'- aUCCCAcaccUCgcCACGUUuAUAGGCcgCCGCa -3'
miRNA:   3'- -AGGGU----AGa-GUGCAA-UGUUUGuaGGUG- -5'
9717 5' -47.4 NC_002577.1 + 54445 0.68 0.998476
Target:  5'- gCCCuUCUCcCGUUACuuucuUGUCCGCa -3'
miRNA:   3'- aGGGuAGAGuGCAAUGuuu--GUAGGUG- -5'
9717 5' -47.4 NC_002577.1 + 83747 0.68 0.998476
Target:  5'- gCCCAUUUCcCGccu--AACAUCCACa -3'
miRNA:   3'- aGGGUAGAGuGCaauguUUGUAGGUG- -5'
9717 5' -47.4 NC_002577.1 + 139715 0.7 0.99309
Target:  5'- cCCCGUCUCggACGgcgACAuauCGUCCAg -3'
miRNA:   3'- aGGGUAGAG--UGCaa-UGUuu-GUAGGUg -5'
9717 5' -47.4 NC_002577.1 + 48955 0.71 0.987824
Target:  5'- cCCCucuguuuAUgUCGCGggACAuGCAUCCGCu -3'
miRNA:   3'- aGGG-------UAgAGUGCaaUGUuUGUAGGUG- -5'
9717 5' -47.4 NC_002577.1 + 128991 0.74 0.950885
Target:  5'- gUCCCGUCcgACGUUugGAACG-CCGCc -3'
miRNA:   3'- -AGGGUAGagUGCAAugUUUGUaGGUG- -5'
9717 5' -47.4 NC_002577.1 + 4623 0.74 0.950885
Target:  5'- gUCCCGUCcgACGUUugGAACG-CCGCc -3'
miRNA:   3'- -AGGGUAGagUGCAAugUUUGUaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.