Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9717 | 5' | -47.4 | NC_002577.1 | + | 137347 | 0.66 | 0.999903 |
Target: 5'- gCCCGUcCUCGCaagACGAcaGCAuuUCCGCg -3' miRNA: 3'- aGGGUA-GAGUGcaaUGUU--UGU--AGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 83747 | 0.68 | 0.998476 |
Target: 5'- gCCCAUUUCcCGccu--AACAUCCACa -3' miRNA: 3'- aGGGUAGAGuGCaauguUUGUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 54445 | 0.68 | 0.998476 |
Target: 5'- gCCCuUCUCcCGUUACuuucuUGUCCGCa -3' miRNA: 3'- aGGGuAGAGuGCAAUGuuu--GUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 100387 | 0.67 | 0.999164 |
Target: 5'- aCCaCAUCUgaGCGacACAAACGUUCGCg -3' miRNA: 3'- aGG-GUAGAg-UGCaaUGUUUGUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 140945 | 0.67 | 0.999324 |
Target: 5'- -gCCGUUUCGuuuccACAGACGUCCACg -3' miRNA: 3'- agGGUAGAGUgcaa-UGUUUGUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 39830 | 0.66 | 0.999788 |
Target: 5'- cCCUAUCcugUACGUUaaaGCGAAUAgCCACg -3' miRNA: 3'- aGGGUAGa--GUGCAA---UGUUUGUaGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 91969 | 0.66 | 0.999831 |
Target: 5'- gCCCAguUCguaGCGUUgaugccgACAGccGCAUCCGCa -3' miRNA: 3'- aGGGU--AGag-UGCAA-------UGUU--UGUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 150991 | 0.66 | 0.999873 |
Target: 5'- aUCCCAgaauuUCUgACaccggUACAuauuACAUCCGCg -3' miRNA: 3'- -AGGGU-----AGAgUGca---AUGUu---UGUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 137423 | 0.66 | 0.999903 |
Target: 5'- cCCCucgcaCUCcaGCGc-GCAAGCGUCCACc -3' miRNA: 3'- aGGGua---GAG--UGCaaUGUUUGUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 139715 | 0.7 | 0.99309 |
Target: 5'- cCCCGUCUCggACGgcgACAuauCGUCCAg -3' miRNA: 3'- aGGGUAGAG--UGCaa-UGUuu-GUAGGUg -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 4623 | 0.74 | 0.950885 |
Target: 5'- gUCCCGUCcgACGUUugGAACG-CCGCc -3' miRNA: 3'- -AGGGUAGagUGCAAugUUUGUaGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 37310 | 1.12 | 0.013183 |
Target: 5'- cUCCCAUCUCACGUUACAAACAUCCACg -3' miRNA: 3'- -AGGGUAGAGUGCAAUGUUUGUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 145722 | 0.66 | 0.999903 |
Target: 5'- cCCCAUCgUCugGagGCGAAgAUUCAg -3' miRNA: 3'- aGGGUAG-AGugCaaUGUUUgUAGGUg -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 159915 | 0.66 | 0.999903 |
Target: 5'- cCCCucgcaCUCcaGCGc-GCAAGCGUCCACc -3' miRNA: 3'- aGGGua---GAG--UGCaaUGUUUGUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 77679 | 0.66 | 0.999873 |
Target: 5'- gUCCCAUCUCAUagccucCAAGCcccuuucuUCCGCu -3' miRNA: 3'- -AGGGUAGAGUGcaau--GUUUGu-------AGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 82529 | 0.67 | 0.999656 |
Target: 5'- cCCCAUCUguCGUUACAcAGCGcUUgACu -3' miRNA: 3'- aGGGUAGAguGCAAUGU-UUGU-AGgUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 156392 | 0.67 | 0.999324 |
Target: 5'- -gCCGUUUCGuuuccACAGACGUCCACg -3' miRNA: 3'- agGGUAGAGUgcaa-UGUUUGUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 32767 | 0.68 | 0.998973 |
Target: 5'- aUCCCAcaccUCgcCACGUUuAUAGGCcgCCGCa -3' miRNA: 3'- -AGGGU----AGa-GUGCAA-UGUUUGuaGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 48955 | 0.71 | 0.987824 |
Target: 5'- cCCCucuguuuAUgUCGCGggACAuGCAUCCGCu -3' miRNA: 3'- aGGG-------UAgAGUGCaaUGUuUGUAGGUG- -5' |
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9717 | 5' | -47.4 | NC_002577.1 | + | 128991 | 0.74 | 0.950885 |
Target: 5'- gUCCCGUCcgACGUUugGAACG-CCGCc -3' miRNA: 3'- -AGGGUAGagUGCAAugUUUGUaGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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