miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9718 5' -55.6 NC_002577.1 + 135201 0.66 0.942103
Target:  5'- gGcCGCGGUCUgccguGCGGAuGCGUcACCg -3'
miRNA:   3'- aCaGCGCCGGGu----UGUCUuCGCAcUGG- -5'
9718 5' -55.6 NC_002577.1 + 162127 0.66 0.942103
Target:  5'- gGcCGCGGUCUgccguGCGGAuGCGUcACCg -3'
miRNA:   3'- aCaGCGCCGGGu----UGUCUuCGCAcUGG- -5'
9718 5' -55.6 NC_002577.1 + 15544 0.66 0.937422
Target:  5'- uUGUCGaCGGgCUAugGGuAGCGUGuCg -3'
miRNA:   3'- -ACAGC-GCCgGGUugUCuUCGCACuGg -5'
9718 5' -55.6 NC_002577.1 + 57991 0.66 0.937422
Target:  5'- -uUCGCGGCCgc-CAGAAGac-GGCCg -3'
miRNA:   3'- acAGCGCCGGguuGUCUUCgcaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 136721 0.66 0.937422
Target:  5'- cGUCGCGcacGCuUCAGgGGggGUGgggGGCCu -3'
miRNA:   3'- aCAGCGC---CG-GGUUgUCuuCGCa--CUGG- -5'
9718 5' -55.6 NC_002577.1 + 162331 0.66 0.937422
Target:  5'- cG-CGCGGCgaCAGCgccuAGAAGaccCGUGGCCu -3'
miRNA:   3'- aCaGCGCCGg-GUUG----UCUUC---GCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 134997 0.66 0.937422
Target:  5'- cG-CGCGGCgaCAGCgccuAGAAGaccCGUGGCCu -3'
miRNA:   3'- aCaGCGCCGg-GUUG----UCUUC---GCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 136934 0.66 0.927354
Target:  5'- cUGUCGCcagcugcacaaGGCCCccCAcccccccuGAAGCGUG-CCg -3'
miRNA:   3'- -ACAGCG-----------CCGGGuuGU--------CUUCGCACuGG- -5'
9718 5' -55.6 NC_002577.1 + 135589 0.66 0.927354
Target:  5'- ---aGCGGCUCggUGGGAGUGcGACUc -3'
miRNA:   3'- acagCGCCGGGuuGUCUUCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 160404 0.66 0.927354
Target:  5'- cUGUCGCcagcugcacaaGGCCCccCAcccccccuGAAGCGUG-CCg -3'
miRNA:   3'- -ACAGCG-----------CCGGGuuGU--------CUUCGCACuGG- -5'
9718 5' -55.6 NC_002577.1 + 161749 0.66 0.927354
Target:  5'- ---aGCGGCUCggUGGGAGUGcGACUc -3'
miRNA:   3'- acagCGCCGGGuuGUCUUCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 137214 0.66 0.921965
Target:  5'- cG-CGagaaGGCCCGACGGcugcaacGCGUGGCg -3'
miRNA:   3'- aCaGCg---CCGGGUUGUCuu-----CGCACUGg -5'
9718 5' -55.6 NC_002577.1 + 160124 0.66 0.921965
Target:  5'- cG-CGagaaGGCCCGACGGcugcaacGCGUGGCg -3'
miRNA:   3'- aCaGCg---CCGGGUUGUCuu-----CGCACUGg -5'
9718 5' -55.6 NC_002577.1 + 94585 0.67 0.91048
Target:  5'- aUGUCGauguGGCCaUGAUGGAAGCG-GACg -3'
miRNA:   3'- -ACAGCg---CCGG-GUUGUCUUCGCaCUGg -5'
9718 5' -55.6 NC_002577.1 + 121548 0.67 0.904387
Target:  5'- -uUCGCuuucGGCCCGGaGGAGGCGgcgGGCa -3'
miRNA:   3'- acAGCG----CCGGGUUgUCUUCGCa--CUGg -5'
9718 5' -55.6 NC_002577.1 + 11302 0.67 0.904387
Target:  5'- cGUC-CGGgCCAAUcgGGAAGCGgGAUCc -3'
miRNA:   3'- aCAGcGCCgGGUUG--UCUUCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 122312 0.67 0.904387
Target:  5'- cGUC-CGGgCCAAUcgGGAAGCGgGAUCc -3'
miRNA:   3'- aCAGcGCCgGGUUG--UCUUCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 113141 0.67 0.904387
Target:  5'- --cCGCcuaGGCCCuucagaacuACAGAcGCGUGAUCu -3'
miRNA:   3'- acaGCG---CCGGGu--------UGUCUuCGCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 137745 0.67 0.898061
Target:  5'- cGUCGCGGCCuuCAAUuccgcgcuAGAGGag-GGCCu -3'
miRNA:   3'- aCAGCGCCGG--GUUG--------UCUUCgcaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 125598 0.67 0.898061
Target:  5'- aUGUcCGCcGCgCAgacGCAGAAGCGccggGGCCg -3'
miRNA:   3'- -ACA-GCGcCGgGU---UGUCUUCGCa---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.