miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9718 5' -55.6 NC_002577.1 + 41568 1.13 0.002024
Target:  5'- gUGUCGCGGCCCAACAGAAGCGUGACCg -3'
miRNA:   3'- -ACAGCGCCGGGUUGUCUUCGCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 122910 0.76 0.453064
Target:  5'- gGUCGCGGCCCGaagGCGGAgaugccgAGCucGGCCa -3'
miRNA:   3'- aCAGCGCCGGGU---UGUCU-------UCGcaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 10704 0.76 0.453064
Target:  5'- gGUCGCGGCCCGaagGCGGAgaugccgAGCucGGCCa -3'
miRNA:   3'- aCAGCGCCGGGU---UGUCU-------UCGcaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 76370 0.74 0.520208
Target:  5'- aGUCGCGGCgC-ACGGAAGCGaGuCCc -3'
miRNA:   3'- aCAGCGCCGgGuUGUCUUCGCaCuGG- -5'
9718 5' -55.6 NC_002577.1 + 84951 0.74 0.529992
Target:  5'- aGUUGCGGCCgCGuaAGuGGCGUGGCUg -3'
miRNA:   3'- aCAGCGCCGG-GUugUCuUCGCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 160617 0.73 0.579798
Target:  5'- cGUCGCGGCacgcuUCAGgGGggGUGgggGGCCu -3'
miRNA:   3'- aCAGCGCCG-----GGUUgUCuuCGCa--CUGG- -5'
9718 5' -55.6 NC_002577.1 + 137392 0.73 0.589895
Target:  5'- cGUCG-GGUCCGcGCAGAAGCGccGCCa -3'
miRNA:   3'- aCAGCgCCGGGU-UGUCUUCGCacUGG- -5'
9718 5' -55.6 NC_002577.1 + 159946 0.73 0.589895
Target:  5'- cGUCG-GGUCCGcGCAGAAGCGccGCCa -3'
miRNA:   3'- aCAGCgCCGGGU-UGUCUUCGCacUGG- -5'
9718 5' -55.6 NC_002577.1 + 140095 0.72 0.671154
Target:  5'- cGUCGCGaGCCCccgcgcgccacAACAu-AGCGUGGCUc -3'
miRNA:   3'- aCAGCGC-CGGG-----------UUGUcuUCGCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 157243 0.72 0.671154
Target:  5'- cGUCGCGaGCCCccgcgcgccacAACAu-AGCGUGGCUc -3'
miRNA:   3'- aCAGCGC-CGGG-----------UUGUcuUCGCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 135624 0.71 0.691318
Target:  5'- aGUCGgGGCCgGGCGGccucuGGCGcccGGCCa -3'
miRNA:   3'- aCAGCgCCGGgUUGUCu----UCGCa--CUGG- -5'
9718 5' -55.6 NC_002577.1 + 161714 0.71 0.691318
Target:  5'- aGUCGgGGCCgGGCGGccucuGGCGcccGGCCa -3'
miRNA:   3'- aCAGCgCCGGgUUGUCu----UCGCa--CUGG- -5'
9718 5' -55.6 NC_002577.1 + 154538 0.71 0.721175
Target:  5'- uUGaCGUGGCCgcaAACAGAGcuCGUGGCCa -3'
miRNA:   3'- -ACaGCGCCGGg--UUGUCUUc-GCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 138487 0.7 0.750352
Target:  5'- gGcCGCGGCCgCGgccGCGGAggacGGCGcGGCCg -3'
miRNA:   3'- aCaGCGCCGG-GU---UGUCU----UCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 158850 0.7 0.750352
Target:  5'- gGcCGCGGCCgCGgccGCGGAggacGGCGcGGCCg -3'
miRNA:   3'- aCaGCGCCGG-GU---UGUCU----UCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 28468 0.7 0.750352
Target:  5'- cGUCuGcCGGCCCAAgGGAuaccucGCGaGACCa -3'
miRNA:   3'- aCAG-C-GCCGGGUUgUCUu-----CGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 135298 0.7 0.778603
Target:  5'- cUGUCGCGcGCCCuguuccuccugGACGGuggucuccGGCG-GACCg -3'
miRNA:   3'- -ACAGCGC-CGGG-----------UUGUCu-------UCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 162040 0.7 0.778603
Target:  5'- cUGUCGCGcGCCCuguuccuccugGACGGuggucuccGGCG-GACCg -3'
miRNA:   3'- -ACAGCGC-CGGG-----------UUGUCu-------UCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 159988 0.69 0.787772
Target:  5'- ---gGUGGCCCugauAACGGAAGCGaucGGCCc -3'
miRNA:   3'- acagCGCCGGG----UUGUCUUCGCa--CUGG- -5'
9718 5' -55.6 NC_002577.1 + 137349 0.69 0.796804
Target:  5'- ---gGCGGCCCugauAACGGAAGCGaucGCCc -3'
miRNA:   3'- acagCGCCGGG----UUGUCUUCGCac-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.