miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9718 5' -55.6 NC_002577.1 + 8016 0.67 0.898061
Target:  5'- aUGUcCGCcGCgCAgacGCAGAAGCGccggGGCCg -3'
miRNA:   3'- -ACA-GCGcCGgGU---UGUCUUCGCa---CUGG- -5'
9718 5' -55.6 NC_002577.1 + 137745 0.67 0.898061
Target:  5'- cGUCGCGGCCuuCAAUuccgcgcuAGAGGag-GGCCu -3'
miRNA:   3'- aCAGCGCCGG--GUUG--------UCUUCgcaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 161514 0.67 0.891508
Target:  5'- --aCGgGGCCCAGCAcgucccgcGAGGUuaUGACCg -3'
miRNA:   3'- acaGCgCCGGGUUGU--------CUUCGc-ACUGG- -5'
9718 5' -55.6 NC_002577.1 + 135823 0.67 0.891508
Target:  5'- --aCGgGGCCCAGCAcgucccgcGAGGUuaUGACCg -3'
miRNA:   3'- acaGCgCCGGGUUGU--------CUUCGc-ACUGG- -5'
9718 5' -55.6 NC_002577.1 + 137455 0.67 0.889497
Target:  5'- gGUCGUGGCuCCGAgaccugcuugaucuCAGGAGCGccguguacgcGGCCu -3'
miRNA:   3'- aCAGCGCCG-GGUU--------------GUCUUCGCa---------CUGG- -5'
9718 5' -55.6 NC_002577.1 + 159882 0.67 0.889497
Target:  5'- gGUCGUGGCuCCGAgaccugcuugaucuCAGGAGCGccguguacgcGGCCu -3'
miRNA:   3'- aCAGCGCCG-GGUU--------------GUCUUCGCa---------CUGG- -5'
9718 5' -55.6 NC_002577.1 + 51726 0.67 0.877729
Target:  5'- cGUCGgGGacuaCCAACAuGAcuuuGCuGUGGCCa -3'
miRNA:   3'- aCAGCgCCg---GGUUGU-CUu---CG-CACUGG- -5'
9718 5' -55.6 NC_002577.1 + 53848 0.68 0.870512
Target:  5'- --cCGCGGUCUAugGGAGGCaaguuGUGAUg -3'
miRNA:   3'- acaGCGCCGGGUugUCUUCG-----CACUGg -5'
9718 5' -55.6 NC_002577.1 + 11081 0.68 0.870512
Target:  5'- gGcCGCGGCCgGACAcGAAcaCGUGGCa -3'
miRNA:   3'- aCaGCGCCGGgUUGU-CUUc-GCACUGg -5'
9718 5' -55.6 NC_002577.1 + 122029 0.68 0.870512
Target:  5'- cGUCcgacCGGCCCGGCGGAAcGCGaugcGGCg -3'
miRNA:   3'- aCAGc---GCCGGGUUGUCUU-CGCa---CUGg -5'
9718 5' -55.6 NC_002577.1 + 11585 0.68 0.870512
Target:  5'- cGUCcgacCGGCCCGGCGGAAcGCGaugcGGCg -3'
miRNA:   3'- aCAGc---GCCGGGUUGUCUU-CGCa---CUGg -5'
9718 5' -55.6 NC_002577.1 + 122532 0.68 0.870512
Target:  5'- gGcCGCGGCCgGACAcGAAcaCGUGGCa -3'
miRNA:   3'- aCaGCGCCGGgUUGU-CUUc-GCACUGg -5'
9718 5' -55.6 NC_002577.1 + 151347 0.68 0.863084
Target:  5'- aGUaCGCGGCgCUguAACuuGAGGCGUGcCCu -3'
miRNA:   3'- aCA-GCGCCG-GG--UUGu-CUUCGCACuGG- -5'
9718 5' -55.6 NC_002577.1 + 13040 0.68 0.863084
Target:  5'- cGUCGaUGGUUCGACAGuGGCG-GGCa -3'
miRNA:   3'- aCAGC-GCCGGGUUGUCuUCGCaCUGg -5'
9718 5' -55.6 NC_002577.1 + 136939 0.68 0.855449
Target:  5'- gGUCGUaacaaGGCUCcGCGGA-GCGcGACCg -3'
miRNA:   3'- aCAGCG-----CCGGGuUGUCUuCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 152804 0.68 0.855449
Target:  5'- cG-CGCGGCCCGcgcuGCAGuucaccGAGCGUGcgGCg -3'
miRNA:   3'- aCaGCGCCGGGU----UGUC------UUCGCAC--UGg -5'
9718 5' -55.6 NC_002577.1 + 160398 0.68 0.855449
Target:  5'- gGUCGUaacaaGGCUCcGCGGA-GCGcGACCg -3'
miRNA:   3'- aCAGCG-----CCGGGuUGUCUuCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 23384 0.69 0.822981
Target:  5'- cGUCGCGGCCgGauagcaacuGCAGAGaucGCGcuACCa -3'
miRNA:   3'- aCAGCGCCGGgU---------UGUCUU---CGCacUGG- -5'
9718 5' -55.6 NC_002577.1 + 114305 0.69 0.797699
Target:  5'- aGUUGCcccagcccccaaaaCCCAGCAGAacGGCGUGGCUg -3'
miRNA:   3'- aCAGCGcc------------GGGUUGUCU--UCGCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 137349 0.69 0.796804
Target:  5'- ---gGCGGCCCugauAACGGAAGCGaucGCCc -3'
miRNA:   3'- acagCGCCGGG----UUGUCUUCGCac-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.