miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9718 5' -55.6 NC_002577.1 + 8016 0.67 0.898061
Target:  5'- aUGUcCGCcGCgCAgacGCAGAAGCGccggGGCCg -3'
miRNA:   3'- -ACA-GCGcCGgGU---UGUCUUCGCa---CUGG- -5'
9718 5' -55.6 NC_002577.1 + 10704 0.76 0.453064
Target:  5'- gGUCGCGGCCCGaagGCGGAgaugccgAGCucGGCCa -3'
miRNA:   3'- aCAGCGCCGGGU---UGUCU-------UCGcaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 11081 0.68 0.870512
Target:  5'- gGcCGCGGCCgGACAcGAAcaCGUGGCa -3'
miRNA:   3'- aCaGCGCCGGgUUGU-CUUc-GCACUGg -5'
9718 5' -55.6 NC_002577.1 + 11302 0.67 0.904387
Target:  5'- cGUC-CGGgCCAAUcgGGAAGCGgGAUCc -3'
miRNA:   3'- aCAGcGCCgGGUUG--UCUUCGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 11585 0.68 0.870512
Target:  5'- cGUCcgacCGGCCCGGCGGAAcGCGaugcGGCg -3'
miRNA:   3'- aCAGc---GCCGGGUUGUCUU-CGCa---CUGg -5'
9718 5' -55.6 NC_002577.1 + 13040 0.68 0.863084
Target:  5'- cGUCGaUGGUUCGACAGuGGCG-GGCa -3'
miRNA:   3'- aCAGC-GCCGGGUUGUCuUCGCaCUGg -5'
9718 5' -55.6 NC_002577.1 + 15544 0.66 0.937422
Target:  5'- uUGUCGaCGGgCUAugGGuAGCGUGuCg -3'
miRNA:   3'- -ACAGC-GCCgGGUugUCuUCGCACuGg -5'
9718 5' -55.6 NC_002577.1 + 23384 0.69 0.822981
Target:  5'- cGUCGCGGCCgGauagcaacuGCAGAGaucGCGcuACCa -3'
miRNA:   3'- aCAGCGCCGGgU---------UGUCUU---CGCacUGG- -5'
9718 5' -55.6 NC_002577.1 + 28468 0.7 0.750352
Target:  5'- cGUCuGcCGGCCCAAgGGAuaccucGCGaGACCa -3'
miRNA:   3'- aCAG-C-GCCGGGUUgUCUu-----CGCaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 41568 1.13 0.002024
Target:  5'- gUGUCGCGGCCCAACAGAAGCGUGACCg -3'
miRNA:   3'- -ACAGCGCCGGGUUGUCUUCGCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 51726 0.67 0.877729
Target:  5'- cGUCGgGGacuaCCAACAuGAcuuuGCuGUGGCCa -3'
miRNA:   3'- aCAGCgCCg---GGUUGU-CUu---CG-CACUGG- -5'
9718 5' -55.6 NC_002577.1 + 53848 0.68 0.870512
Target:  5'- --cCGCGGUCUAugGGAGGCaaguuGUGAUg -3'
miRNA:   3'- acaGCGCCGGGUugUCUUCG-----CACUGg -5'
9718 5' -55.6 NC_002577.1 + 57991 0.66 0.937422
Target:  5'- -uUCGCGGCCgc-CAGAAGac-GGCCg -3'
miRNA:   3'- acAGCGCCGGguuGUCUUCgcaCUGG- -5'
9718 5' -55.6 NC_002577.1 + 76370 0.74 0.520208
Target:  5'- aGUCGCGGCgC-ACGGAAGCGaGuCCc -3'
miRNA:   3'- aCAGCGCCGgGuUGUCUUCGCaCuGG- -5'
9718 5' -55.6 NC_002577.1 + 84951 0.74 0.529992
Target:  5'- aGUUGCGGCCgCGuaAGuGGCGUGGCUg -3'
miRNA:   3'- aCAGCGCCGG-GUugUCuUCGCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 94585 0.67 0.91048
Target:  5'- aUGUCGauguGGCCaUGAUGGAAGCG-GACg -3'
miRNA:   3'- -ACAGCg---CCGG-GUUGUCUUCGCaCUGg -5'
9718 5' -55.6 NC_002577.1 + 113141 0.67 0.904387
Target:  5'- --cCGCcuaGGCCCuucagaacuACAGAcGCGUGAUCu -3'
miRNA:   3'- acaGCG---CCGGGu--------UGUCUuCGCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 114305 0.69 0.797699
Target:  5'- aGUUGCcccagcccccaaaaCCCAGCAGAacGGCGUGGCUg -3'
miRNA:   3'- aCAGCGcc------------GGGUUGUCU--UCGCACUGG- -5'
9718 5' -55.6 NC_002577.1 + 121548 0.67 0.904387
Target:  5'- -uUCGCuuucGGCCCGGaGGAGGCGgcgGGCa -3'
miRNA:   3'- acAGCG----CCGGGUUgUCUUCGCa--CUGg -5'
9718 5' -55.6 NC_002577.1 + 122029 0.68 0.870512
Target:  5'- cGUCcgacCGGCCCGGCGGAAcGCGaugcGGCg -3'
miRNA:   3'- aCAGc---GCCGGGUUGUCUU-CGCa---CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.