miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9719 3' -58.4 NC_002577.1 + 3351 0.66 0.822329
Target:  5'- -cGCGGGACGaa--GCcGCCCCGGu- -3'
miRNA:   3'- aaCGCCUUGCaauaCGcCGGGGCCcu -5'
9719 3' -58.4 NC_002577.1 + 130263 0.66 0.822329
Target:  5'- -cGCGGGACGaa--GCcGCCCCGGu- -3'
miRNA:   3'- aaCGCCUUGCaauaCGcCGGGGCCcu -5'
9719 3' -58.4 NC_002577.1 + 11766 0.66 0.822329
Target:  5'- -cGCGGAcCGggc-GCGGaCCCGGGc -3'
miRNA:   3'- aaCGCCUuGCaauaCGCCgGGGCCCu -5'
9719 3' -58.4 NC_002577.1 + 121848 0.66 0.822329
Target:  5'- -cGCGGAcCGggc-GCGGaCCCGGGc -3'
miRNA:   3'- aaCGCCUuGCaauaCGCCgGGGCCCu -5'
9719 3' -58.4 NC_002577.1 + 106642 0.66 0.822329
Target:  5'- aUUGCGGGAUGgaagucccGCGGCCCCc--- -3'
miRNA:   3'- -AACGCCUUGCaaua----CGCCGGGGcccu -5'
9719 3' -58.4 NC_002577.1 + 160382 0.67 0.778251
Target:  5'- -cGCGGAGCGcgac-CGGCCCUcGGAc -3'
miRNA:   3'- aaCGCCUUGCaauacGCCGGGGcCCU- -5'
9719 3' -58.4 NC_002577.1 + 136955 0.67 0.778251
Target:  5'- -cGCGGAGCGcgac-CGGCCCUcGGAc -3'
miRNA:   3'- aaCGCCUUGCaauacGCCGGGGcCCU- -5'
9719 3' -58.4 NC_002577.1 + 26480 0.67 0.778251
Target:  5'- aUGCaGAACGUUGU-UGGCCCCGu-- -3'
miRNA:   3'- aACGcCUUGCAAUAcGCCGGGGCccu -5'
9719 3' -58.4 NC_002577.1 + 60202 0.67 0.774573
Target:  5'- -aGCGGAuagcccauggguuCGgcg-GCGGCCUCGGGc -3'
miRNA:   3'- aaCGCCUu------------GCaauaCGCCGGGGCCCu -5'
9719 3' -58.4 NC_002577.1 + 93558 0.67 0.769019
Target:  5'- -aGCGaGAgucGCGUgGUGCGGCUgCGcGGAg -3'
miRNA:   3'- aaCGC-CU---UGCAaUACGCCGGgGC-CCU- -5'
9719 3' -58.4 NC_002577.1 + 76352 0.67 0.759669
Target:  5'- -aGCGGAccuuCGUcgccgaguaGUGCGGUUCUGGGAa -3'
miRNA:   3'- aaCGCCUu---GCAa--------UACGCCGGGGCCCU- -5'
9719 3' -58.4 NC_002577.1 + 45860 0.67 0.730993
Target:  5'- -gGCGGAcCGUUAUgcGCGGCauaUUGGGGa -3'
miRNA:   3'- aaCGCCUuGCAAUA--CGCCGg--GGCCCU- -5'
9719 3' -58.4 NC_002577.1 + 100151 0.68 0.711445
Target:  5'- uUUGCGGGAUaagGUUGU-CGGaCCCCGcGGGu -3'
miRNA:   3'- -AACGCCUUG---CAAUAcGCC-GGGGC-CCU- -5'
9719 3' -58.4 NC_002577.1 + 141126 0.68 0.681652
Target:  5'- cUGUGGAaacgaaACGgccgcgGCGGCCCCGcGGu -3'
miRNA:   3'- aACGCCU------UGCaaua--CGCCGGGGC-CCu -5'
9719 3' -58.4 NC_002577.1 + 156212 0.68 0.681652
Target:  5'- cUGUGGAaacgaaACGgccgcgGCGGCCCCGcGGu -3'
miRNA:   3'- aACGCCU------UGCaaua--CGCCGGGGC-CCu -5'
9719 3' -58.4 NC_002577.1 + 162666 0.7 0.574976
Target:  5'- cUGCGGAAaccgcuccucCGgauccgGUGCGGCCCCguccgacuuugccguGGGAg -3'
miRNA:   3'- aACGCCUU----------GCaa----UACGCCGGGG---------------CCCU- -5'
9719 3' -58.4 NC_002577.1 + 134662 0.7 0.574976
Target:  5'- cUGCGGAAaccgcuccucCGgauccgGUGCGGCCCCguccgacuuugccguGGGAg -3'
miRNA:   3'- aACGCCUU----------GCaa----UACGCCGGGG---------------CCCU- -5'
9719 3' -58.4 NC_002577.1 + 48725 0.7 0.570986
Target:  5'- -aGCauuGGAAUGUgcgucuguaacuUGUGgGGCCCCGGGc -3'
miRNA:   3'- aaCG---CCUUGCA------------AUACgCCGGGGCCCu -5'
9719 3' -58.4 NC_002577.1 + 11695 0.7 0.561041
Target:  5'- aUGCGGAGCGcgagaGCGGagCCGGGGa -3'
miRNA:   3'- aACGCCUUGCaaua-CGCCggGGCCCU- -5'
9719 3' -58.4 NC_002577.1 + 121919 0.7 0.561041
Target:  5'- aUGCGGAGCGcgagaGCGGagCCGGGGa -3'
miRNA:   3'- aACGCCUUGCaaua-CGCCggGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.