miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9719 5' -46.6 NC_002577.1 + 105884 0.66 0.999934
Target:  5'- -aUCCCGGGcCCGCGAuugccGAGGAUa--- -3'
miRNA:   3'- agAGGGCCCuGGUGUU-----UUUUUAguuu -5'
9719 5' -46.6 NC_002577.1 + 116912 0.66 0.999884
Target:  5'- uUCUCUCGGGgugaGCCACAuuGGGAa---- -3'
miRNA:   3'- -AGAGGGCCC----UGGUGUuuUUUUaguuu -5'
9719 5' -46.6 NC_002577.1 + 151914 0.66 0.999849
Target:  5'- -gUCCCGcGGugUGCuuuuAAAAGUCAAAa -3'
miRNA:   3'- agAGGGC-CCugGUGuu--UUUUUAGUUU- -5'
9719 5' -46.6 NC_002577.1 + 124706 0.66 0.999849
Target:  5'- gCUCaCCGGccCCGCGGGAGAcgCAGAu -3'
miRNA:   3'- aGAG-GGCCcuGGUGUUUUUUuaGUUU- -5'
9719 5' -46.6 NC_002577.1 + 58173 0.66 0.999849
Target:  5'- gUCUUCUGGcGGCCGCGAAAAua-CAu- -3'
miRNA:   3'- -AGAGGGCC-CUGGUGUUUUUuuaGUuu -5'
9719 5' -46.6 NC_002577.1 + 8908 0.66 0.999849
Target:  5'- gCUCaCCGGccCCGCGGGAGAcgCAGAu -3'
miRNA:   3'- aGAG-GGCCcuGGUGUUUUUUuaGUUU- -5'
9719 5' -46.6 NC_002577.1 + 152910 0.67 0.999678
Target:  5'- --aCCCGGagcGGCCAUcgaGAAAGAAUCAGGu -3'
miRNA:   3'- agaGGGCC---CUGGUG---UUUUUUUAGUUU- -5'
9719 5' -46.6 NC_002577.1 + 5320 0.67 0.999592
Target:  5'- --aUCCGGGGCC-CGcuAAGGUCGAAc -3'
miRNA:   3'- agaGGGCCCUGGuGUuuUUUUAGUUU- -5'
9719 5' -46.6 NC_002577.1 + 128294 0.67 0.999592
Target:  5'- --aUCCGGGGCC-CGcuAAGGUCGAAc -3'
miRNA:   3'- agaGGGCCCUGGuGUuuUUUUAGUUU- -5'
9719 5' -46.6 NC_002577.1 + 114268 0.68 0.999358
Target:  5'- --aCCCGGGACCGgcUGAAAAAccuGUCAu- -3'
miRNA:   3'- agaGGGCCCUGGU--GUUUUUU---UAGUuu -5'
9719 5' -46.6 NC_002577.1 + 21648 0.68 0.999203
Target:  5'- gCUUCUGGGACgACGAAAcuAUCu-- -3'
miRNA:   3'- aGAGGGCCCUGgUGUUUUuuUAGuuu -5'
9719 5' -46.6 NC_002577.1 + 155268 0.68 0.998794
Target:  5'- cUCUCCCGaGGGCgGUAGGAAcGUCGGGa -3'
miRNA:   3'- -AGAGGGC-CCUGgUGUUUUUuUAGUUU- -5'
9719 5' -46.6 NC_002577.1 + 142070 0.68 0.998794
Target:  5'- cUCUCCCGaGGGCgGUAGGAAcGUCGGGa -3'
miRNA:   3'- -AGAGGGC-CCUGgUGUUUUUuUAGUUU- -5'
9719 5' -46.6 NC_002577.1 + 130206 0.69 0.997851
Target:  5'- cUUCUCGGGcACCGCAccGAAGGAUgGAGu -3'
miRNA:   3'- aGAGGGCCC-UGGUGU--UUUUUUAgUUU- -5'
9719 5' -46.6 NC_002577.1 + 3408 0.69 0.997851
Target:  5'- cUUCUCGGGcACCGCAccGAAGGAUgGAGu -3'
miRNA:   3'- aGAGGGCCC-UGGUGU--UUUUUUAgUUU- -5'
9719 5' -46.6 NC_002577.1 + 8268 0.69 0.997425
Target:  5'- cCUCUCGGGAgcgUCGCAGGAAAGUa--- -3'
miRNA:   3'- aGAGGGCCCU---GGUGUUUUUUUAguuu -5'
9719 5' -46.6 NC_002577.1 + 125346 0.69 0.997425
Target:  5'- cCUCUCGGGAgcgUCGCAGGAAAGUa--- -3'
miRNA:   3'- aGAGGGCCCU---GGUGUUUUUUUAguuu -5'
9719 5' -46.6 NC_002577.1 + 156112 0.7 0.996358
Target:  5'- aUCUCCCGGGguggcgggugGCUGCGGAGAAAa---- -3'
miRNA:   3'- -AGAGGGCCC----------UGGUGUUUUUUUaguuu -5'
9719 5' -46.6 NC_002577.1 + 141226 0.7 0.996358
Target:  5'- aUCUCCCGGGguggcgggugGCUGCGGAGAAAa---- -3'
miRNA:   3'- -AGAGGGCCC----------UGGUGUUUUUUUaguuu -5'
9719 5' -46.6 NC_002577.1 + 151741 0.7 0.994953
Target:  5'- --aCCgCGGGACCACGGcgGAAUUAu- -3'
miRNA:   3'- agaGG-GCCCUGGUGUUuuUUUAGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.