miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9720 3' -49.2 NC_002577.1 + 33524 0.66 0.999124
Target:  5'- cUUCGgaaCGCGUAacgagcCGCUCgCGAGAGCGCu -3'
miRNA:   3'- cAAGCa--GUGUAU------GCGGG-GCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 12112 0.66 0.998928
Target:  5'- uUUCG-CGCucgGCGCgCCGGAGcagGCGCg -3'
miRNA:   3'- cAAGCaGUGua-UGCGgGGCUUU---UGUG- -5'
9720 3' -49.2 NC_002577.1 + 55719 0.66 0.998928
Target:  5'- -gUCGUUACGaACGCUCUGGucGGCAUc -3'
miRNA:   3'- caAGCAGUGUaUGCGGGGCUu-UUGUG- -5'
9720 3' -49.2 NC_002577.1 + 104867 0.66 0.998928
Target:  5'- -aUCGUCACGcagGCGaggaCCGAGAGCcgGCg -3'
miRNA:   3'- caAGCAGUGUa--UGCgg--GGCUUUUG--UG- -5'
9720 3' -49.2 NC_002577.1 + 107247 0.66 0.998928
Target:  5'- -aUCGUCGCucaaaaAC-CCCCGGucGCGCu -3'
miRNA:   3'- caAGCAGUGua----UGcGGGGCUuuUGUG- -5'
9720 3' -49.2 NC_002577.1 + 130270 0.66 0.998928
Target:  5'- --aCGUCGCGUccuAC-CCCCGGAGuaguGCAUg -3'
miRNA:   3'- caaGCAGUGUA---UGcGGGGCUUU----UGUG- -5'
9720 3' -49.2 NC_002577.1 + 3344 0.66 0.998928
Target:  5'- --aCGUCGCGUccuAC-CCCCGGAGuaguGCAUg -3'
miRNA:   3'- caaGCAGUGUA---UGcGGGGCUUU----UGUG- -5'
9720 3' -49.2 NC_002577.1 + 60472 0.66 0.998697
Target:  5'- --gCGUCGCcgucGUAUGCCUCGAcguAUACa -3'
miRNA:   3'- caaGCAGUG----UAUGCGGGGCUuu-UGUG- -5'
9720 3' -49.2 NC_002577.1 + 10994 0.66 0.998424
Target:  5'- -aUCG-CGCGc-CGUCCCGAGAACGu -3'
miRNA:   3'- caAGCaGUGUauGCGGGGCUUUUGUg -5'
9720 3' -49.2 NC_002577.1 + 122620 0.66 0.998424
Target:  5'- -aUCG-CGCGc-CGUCCCGAGAACGu -3'
miRNA:   3'- caAGCaGUGUauGCGGGGCUUUUGUg -5'
9720 3' -49.2 NC_002577.1 + 10817 0.66 0.998104
Target:  5'- -cUCGUcCGCGgauCGUCCCGAucccucGCACg -3'
miRNA:   3'- caAGCA-GUGUau-GCGGGGCUuu----UGUG- -5'
9720 3' -49.2 NC_002577.1 + 122796 0.66 0.998104
Target:  5'- -cUCGUcCGCGgauCGUCCCGAucccucGCACg -3'
miRNA:   3'- caAGCA-GUGUau-GCGGGGCUuu----UGUG- -5'
9720 3' -49.2 NC_002577.1 + 119580 0.67 0.997299
Target:  5'- -gUCGUCGCGUagacaucugcGCGCCCacacuugcaaaUGaAAGACACg -3'
miRNA:   3'- caAGCAGUGUA----------UGCGGG-----------GC-UUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 113039 0.67 0.997299
Target:  5'- --gCGUCACcgcaGCGCUCCGGuauCACg -3'
miRNA:   3'- caaGCAGUGua--UGCGGGGCUuuuGUG- -5'
9720 3' -49.2 NC_002577.1 + 56761 0.67 0.997252
Target:  5'- -aUCGUUACAUACGaucuuacUCCgGAAAAUGCc -3'
miRNA:   3'- caAGCAGUGUAUGC-------GGGgCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 52904 0.67 0.996229
Target:  5'- --aUGcCGCAUugaGCGCCCUGAGcauGCGCa -3'
miRNA:   3'- caaGCaGUGUA---UGCGGGGCUUu--UGUG- -5'
9720 3' -49.2 NC_002577.1 + 143136 0.67 0.995576
Target:  5'- -cUCGcCGC--ACGCCCCGGucccACACu -3'
miRNA:   3'- caAGCaGUGuaUGCGGGGCUuu--UGUG- -5'
9720 3' -49.2 NC_002577.1 + 33124 0.68 0.993992
Target:  5'- -----cCGCGUGCGCUgCGAGGGCAUa -3'
miRNA:   3'- caagcaGUGUAUGCGGgGCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 63557 0.68 0.993992
Target:  5'- --aCGUUGgAUAUGCCUcaCGGAAACGCa -3'
miRNA:   3'- caaGCAGUgUAUGCGGG--GCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 120231 0.68 0.993045
Target:  5'- --cCGUCACAccuCuCCCCGAGGAgACa -3'
miRNA:   3'- caaGCAGUGUau-GcGGGGCUUUUgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.