Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9720 | 3' | -49.2 | NC_002577.1 | + | 45450 | 1.11 | 0.010462 |
Target: 5'- gGUUCGUCACAUACGCCCCGAAAACACa -3' miRNA: 3'- -CAAGCAGUGUAUGCGGGGCUUUUGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 78113 | 0.75 | 0.834302 |
Target: 5'- -gUCGUCACA---GCCCgCGggGACGCu -3' miRNA: 3'- caAGCAGUGUaugCGGG-GCuuUUGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 15949 | 0.75 | 0.850369 |
Target: 5'- --aUGUCGCAUACGauguuugaaucguUCCCGAGAGCAUa -3' miRNA: 3'- caaGCAGUGUAUGC-------------GGGGCUUUUGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 25670 | 0.73 | 0.903156 |
Target: 5'- --aCGUCGCAgACGCCaCUGGuaGAACACa -3' miRNA: 3'- caaGCAGUGUaUGCGG-GGCU--UUUGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 27306 | 0.72 | 0.92681 |
Target: 5'- aUUUGUaUAUAUugGCCCCGAAAccaguccGCGCg -3' miRNA: 3'- cAAGCA-GUGUAugCGGGGCUUU-------UGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 107470 | 0.72 | 0.937909 |
Target: 5'- --gCGUCGgA-ACGCCCCGAGGAC-Ca -3' miRNA: 3'- caaGCAGUgUaUGCGGGGCUUUUGuG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 33156 | 0.72 | 0.937909 |
Target: 5'- --cCGUCGCA-GCGCUCCGAAGAUu- -3' miRNA: 3'- caaGCAGUGUaUGCGGGGCUUUUGug -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 153039 | 0.7 | 0.975666 |
Target: 5'- --gCGUCGCAggUGCCaCCgGAAGACGCa -3' miRNA: 3'- caaGCAGUGUauGCGG-GG-CUUUUGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 128836 | 0.69 | 0.98265 |
Target: 5'- -gUCGUCGC--GCGCCgCGGAAaucguuACACg -3' miRNA: 3'- caAGCAGUGuaUGCGGgGCUUU------UGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 4777 | 0.69 | 0.98265 |
Target: 5'- -gUCGUCGC--GCGCCgCGGAAaucguuACACg -3' miRNA: 3'- caAGCAGUGuaUGCGGgGCUUU------UGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 98205 | 0.69 | 0.984604 |
Target: 5'- -----cCAUAUACGCuCUCGGAGACGCg -3' miRNA: 3'- caagcaGUGUAUGCG-GGGCUUUUGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 33342 | 0.69 | 0.984604 |
Target: 5'- -cUCGUUAC--GCGUUCCGAAGACuACg -3' miRNA: 3'- caAGCAGUGuaUGCGGGGCUUUUG-UG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 48875 | 0.69 | 0.986386 |
Target: 5'- cGUUCGUCuACuaaGCGaCCUCGAcgaGAGCGCa -3' miRNA: 3'- -CAAGCAG-UGua-UGC-GGGGCU---UUUGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 153540 | 0.69 | 0.98861 |
Target: 5'- cUUCGcCACccacccacacuccGCGCCCCGAcuGCGCg -3' miRNA: 3'- cAAGCaGUGua-----------UGCGGGGCUuuUGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 47223 | 0.68 | 0.991982 |
Target: 5'- --aCGUUACuagAUGCCCUGGAucACGCa -3' miRNA: 3'- caaGCAGUGua-UGCGGGGCUUu-UGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 120231 | 0.68 | 0.993045 |
Target: 5'- --cCGUCACAccuCuCCCCGAGGAgACa -3' miRNA: 3'- caaGCAGUGUau-GcGGGGCUUUUgUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 73047 | 0.68 | 0.993045 |
Target: 5'- --gUGUCGCAUugGCCCuCGuacGACGa -3' miRNA: 3'- caaGCAGUGUAugCGGG-GCuu-UUGUg -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 63557 | 0.68 | 0.993992 |
Target: 5'- --aCGUUGgAUAUGCCUcaCGGAAACGCa -3' miRNA: 3'- caaGCAGUgUAUGCGGG--GCUUUUGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 33124 | 0.68 | 0.993992 |
Target: 5'- -----cCGCGUGCGCUgCGAGGGCAUa -3' miRNA: 3'- caagcaGUGUAUGCGGgGCUUUUGUG- -5' |
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9720 | 3' | -49.2 | NC_002577.1 | + | 143136 | 0.67 | 0.995576 |
Target: 5'- -cUCGcCGC--ACGCCCCGGucccACACu -3' miRNA: 3'- caAGCaGUGuaUGCGGGGCUuu--UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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