miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9720 3' -49.2 NC_002577.1 + 52904 0.67 0.996229
Target:  5'- --aUGcCGCAUugaGCGCCCUGAGcauGCGCa -3'
miRNA:   3'- caaGCaGUGUA---UGCGGGGCUUu--UGUG- -5'
9720 3' -49.2 NC_002577.1 + 48875 0.69 0.986386
Target:  5'- cGUUCGUCuACuaaGCGaCCUCGAcgaGAGCGCa -3'
miRNA:   3'- -CAAGCAG-UGua-UGC-GGGGCU---UUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 47223 0.68 0.991982
Target:  5'- --aCGUUACuagAUGCCCUGGAucACGCa -3'
miRNA:   3'- caaGCAGUGua-UGCGGGGCUUu-UGUG- -5'
9720 3' -49.2 NC_002577.1 + 45450 1.11 0.010462
Target:  5'- gGUUCGUCACAUACGCCCCGAAAACACa -3'
miRNA:   3'- -CAAGCAGUGUAUGCGGGGCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 33524 0.66 0.999124
Target:  5'- cUUCGgaaCGCGUAacgagcCGCUCgCGAGAGCGCu -3'
miRNA:   3'- cAAGCa--GUGUAU------GCGGG-GCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 33342 0.69 0.984604
Target:  5'- -cUCGUUAC--GCGUUCCGAAGACuACg -3'
miRNA:   3'- caAGCAGUGuaUGCGGGGCUUUUG-UG- -5'
9720 3' -49.2 NC_002577.1 + 33156 0.72 0.937909
Target:  5'- --cCGUCGCA-GCGCUCCGAAGAUu- -3'
miRNA:   3'- caaGCAGUGUaUGCGGGGCUUUUGug -5'
9720 3' -49.2 NC_002577.1 + 33124 0.68 0.993992
Target:  5'- -----cCGCGUGCGCUgCGAGGGCAUa -3'
miRNA:   3'- caagcaGUGUAUGCGGgGCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 27306 0.72 0.92681
Target:  5'- aUUUGUaUAUAUugGCCCCGAAAccaguccGCGCg -3'
miRNA:   3'- cAAGCA-GUGUAugCGGGGCUUU-------UGUG- -5'
9720 3' -49.2 NC_002577.1 + 25670 0.73 0.903156
Target:  5'- --aCGUCGCAgACGCCaCUGGuaGAACACa -3'
miRNA:   3'- caaGCAGUGUaUGCGG-GGCU--UUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 15949 0.75 0.850369
Target:  5'- --aUGUCGCAUACGauguuugaaucguUCCCGAGAGCAUa -3'
miRNA:   3'- caaGCAGUGUAUGC-------------GGGGCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 12112 0.66 0.998928
Target:  5'- uUUCG-CGCucgGCGCgCCGGAGcagGCGCg -3'
miRNA:   3'- cAAGCaGUGua-UGCGgGGCUUU---UGUG- -5'
9720 3' -49.2 NC_002577.1 + 10994 0.66 0.998424
Target:  5'- -aUCG-CGCGc-CGUCCCGAGAACGu -3'
miRNA:   3'- caAGCaGUGUauGCGGGGCUUUUGUg -5'
9720 3' -49.2 NC_002577.1 + 10817 0.66 0.998104
Target:  5'- -cUCGUcCGCGgauCGUCCCGAucccucGCACg -3'
miRNA:   3'- caAGCA-GUGUau-GCGGGGCUuu----UGUG- -5'
9720 3' -49.2 NC_002577.1 + 4777 0.69 0.98265
Target:  5'- -gUCGUCGC--GCGCCgCGGAAaucguuACACg -3'
miRNA:   3'- caAGCAGUGuaUGCGGgGCUUU------UGUG- -5'
9720 3' -49.2 NC_002577.1 + 3344 0.66 0.998928
Target:  5'- --aCGUCGCGUccuAC-CCCCGGAGuaguGCAUg -3'
miRNA:   3'- caaGCAGUGUA---UGcGGGGCUUU----UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.