miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9720 3' -49.2 NC_002577.1 + 45450 1.11 0.010462
Target:  5'- gGUUCGUCACAUACGCCCCGAAAACACa -3'
miRNA:   3'- -CAAGCAGUGUAUGCGGGGCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 122620 0.66 0.998424
Target:  5'- -aUCG-CGCGc-CGUCCCGAGAACGu -3'
miRNA:   3'- caAGCaGUGUauGCGGGGCUUUUGUg -5'
9720 3' -49.2 NC_002577.1 + 52904 0.67 0.996229
Target:  5'- --aUGcCGCAUugaGCGCCCUGAGcauGCGCa -3'
miRNA:   3'- caaGCaGUGUA---UGCGGGGCUUu--UGUG- -5'
9720 3' -49.2 NC_002577.1 + 33124 0.68 0.993992
Target:  5'- -----cCGCGUGCGCUgCGAGGGCAUa -3'
miRNA:   3'- caagcaGUGUAUGCGGgGCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 153540 0.69 0.98861
Target:  5'- cUUCGcCACccacccacacuccGCGCCCCGAcuGCGCg -3'
miRNA:   3'- cAAGCaGUGua-----------UGCGGGGCUuuUGUG- -5'
9720 3' -49.2 NC_002577.1 + 98205 0.69 0.984604
Target:  5'- -----cCAUAUACGCuCUCGGAGACGCg -3'
miRNA:   3'- caagcaGUGUAUGCG-GGGCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 3344 0.66 0.998928
Target:  5'- --aCGUCGCGUccuAC-CCCCGGAGuaguGCAUg -3'
miRNA:   3'- caaGCAGUGUA---UGcGGGGCUUU----UGUG- -5'
9720 3' -49.2 NC_002577.1 + 122796 0.66 0.998104
Target:  5'- -cUCGUcCGCGgauCGUCCCGAucccucGCACg -3'
miRNA:   3'- caAGCA-GUGUau-GCGGGGCUuu----UGUG- -5'
9720 3' -49.2 NC_002577.1 + 73047 0.68 0.993045
Target:  5'- --gUGUCGCAUugGCCCuCGuacGACGa -3'
miRNA:   3'- caaGCAGUGUAugCGGG-GCuu-UUGUg -5'
9720 3' -49.2 NC_002577.1 + 33342 0.69 0.984604
Target:  5'- -cUCGUUAC--GCGUUCCGAAGACuACg -3'
miRNA:   3'- caAGCAGUGuaUGCGGGGCUUUUG-UG- -5'
9720 3' -49.2 NC_002577.1 + 153039 0.7 0.975666
Target:  5'- --gCGUCGCAggUGCCaCCgGAAGACGCa -3'
miRNA:   3'- caaGCAGUGUauGCGG-GG-CUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 128836 0.69 0.98265
Target:  5'- -gUCGUCGC--GCGCCgCGGAAaucguuACACg -3'
miRNA:   3'- caAGCAGUGuaUGCGGgGCUUU------UGUG- -5'
9720 3' -49.2 NC_002577.1 + 56761 0.67 0.997252
Target:  5'- -aUCGUUACAUACGaucuuacUCCgGAAAAUGCc -3'
miRNA:   3'- caAGCAGUGUAUGC-------GGGgCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 60472 0.66 0.998697
Target:  5'- --gCGUCGCcgucGUAUGCCUCGAcguAUACa -3'
miRNA:   3'- caaGCAGUG----UAUGCGGGGCUuu-UGUG- -5'
9720 3' -49.2 NC_002577.1 + 48875 0.69 0.986386
Target:  5'- cGUUCGUCuACuaaGCGaCCUCGAcgaGAGCGCa -3'
miRNA:   3'- -CAAGCAG-UGua-UGC-GGGGCU---UUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 47223 0.68 0.991982
Target:  5'- --aCGUUACuagAUGCCCUGGAucACGCa -3'
miRNA:   3'- caaGCAGUGua-UGCGGGGCUUu-UGUG- -5'
9720 3' -49.2 NC_002577.1 + 120231 0.68 0.993045
Target:  5'- --cCGUCACAccuCuCCCCGAGGAgACa -3'
miRNA:   3'- caaGCAGUGUau-GcGGGGCUUUUgUG- -5'
9720 3' -49.2 NC_002577.1 + 63557 0.68 0.993992
Target:  5'- --aCGUUGgAUAUGCCUcaCGGAAACGCa -3'
miRNA:   3'- caaGCAGUgUAUGCGGG--GCUUUUGUG- -5'
9720 3' -49.2 NC_002577.1 + 55719 0.66 0.998928
Target:  5'- -gUCGUUACGaACGCUCUGGucGGCAUc -3'
miRNA:   3'- caAGCAGUGUaUGCGGGGCUu-UUGUG- -5'
9720 3' -49.2 NC_002577.1 + 10994 0.66 0.998424
Target:  5'- -aUCG-CGCGc-CGUCCCGAGAACGu -3'
miRNA:   3'- caAGCaGUGUauGCGGGGCUUUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.