Results 1 - 10 of 10 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9720 | 5' | -50.2 | NC_002577.1 | + | 72046 | 0.66 | 0.997785 |
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Target: 5'- -aGCaagacgGUCGCGGCGgcAAUGGCg -3' miRNA: 3'- agCGcaga--CAGCGCUGCauUUACUGa -5' |
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| 9720 | 5' | -50.2 | NC_002577.1 | + | 97311 | 0.66 | 0.997785 |
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Target: 5'- --aCGUCUGgagaCGUGACGUGGAaGACc -3' miRNA: 3'- agcGCAGACa---GCGCUGCAUUUaCUGa -5' |
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| 9720 | 5' | -50.2 | NC_002577.1 | + | 4126 | 0.66 | 0.997368 |
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Target: 5'- aCGUGUCUGU-GCGG-GUAGGUGGg- -3' miRNA: 3'- aGCGCAGACAgCGCUgCAUUUACUga -5' |
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| 9720 | 5' | -50.2 | NC_002577.1 | + | 129488 | 0.66 | 0.997368 |
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Target: 5'- aCGUGUCUGU-GCGG-GUAGGUGGg- -3' miRNA: 3'- aGCGCAGACAgCGCUgCAUUUACUga -5' |
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| 9720 | 5' | -50.2 | NC_002577.1 | + | 125781 | 0.66 | 0.996339 |
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Target: 5'- cUGCGUCUG-CGCGGCG-----GACa -3' miRNA: 3'- aGCGCAGACaGCGCUGCauuuaCUGa -5' |
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| 9720 | 5' | -50.2 | NC_002577.1 | + | 7833 | 0.66 | 0.996339 |
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Target: 5'- cUGCGUCUG-CGCGGCG-----GACa -3' miRNA: 3'- aGCGCAGACaGCGCUGCauuuaCUGa -5' |
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| 9720 | 5' | -50.2 | NC_002577.1 | + | 135889 | 0.67 | 0.995645 |
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Target: 5'- aCGCGaCUggaccgcGUCGCGACGgucccAAUGACc -3' miRNA: 3'- aGCGCaGA-------CAGCGCUGCau---UUACUGa -5' |
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| 9720 | 5' | -50.2 | NC_002577.1 | + | 161449 | 0.67 | 0.995645 |
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Target: 5'- aCGCGaCUggaccgcGUCGCGACGgucccAAUGACc -3' miRNA: 3'- aGCGCaGA-------CAGCGCUGCau---UUACUGa -5' |
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| 9720 | 5' | -50.2 | NC_002577.1 | + | 24103 | 0.67 | 0.995001 |
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Target: 5'- aCGCGUCcGUCGUGACGaguaUAAAcGAa- -3' miRNA: 3'- aGCGCAGaCAGCGCUGC----AUUUaCUga -5' |
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| 9720 | 5' | -50.2 | NC_002577.1 | + | 45484 | 1.1 | 0.010986 |
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Target: 5'- aUCGCGUCUGUCGCGACGUAAAUGACUa -3' miRNA: 3'- -AGCGCAGACAGCGCUGCAUUUACUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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