miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9723 3' -53.9 NC_002577.1 + 23010 0.66 0.967089
Target:  5'- gUCGAAUuuguuuuaGGGCGGGACugcguGCGGCcCGAa -3'
miRNA:   3'- -AGCUUAug------CCCGCUCUG-----CGCUGaGUU- -5'
9723 3' -53.9 NC_002577.1 + 45688 0.66 0.965155
Target:  5'- aUCGAAgcgACGGuuagucauuuacgucGCGAcaGACGCGAUUUAAc -3'
miRNA:   3'- -AGCUUa--UGCC---------------CGCU--CUGCGCUGAGUU- -5'
9723 3' -53.9 NC_002577.1 + 97731 0.66 0.963823
Target:  5'- cUCGGcguccGUGCuGGGCGGGagacgcGCGCGAC-CGAg -3'
miRNA:   3'- -AGCU-----UAUG-CCCGCUC------UGCGCUGaGUU- -5'
9723 3' -53.9 NC_002577.1 + 74490 0.67 0.94808
Target:  5'- aCGAcgACaGGGCuuacucuGAGGCGCG-CUCAu -3'
miRNA:   3'- aGCUuaUG-CCCG-------CUCUGCGCuGAGUu -5'
9723 3' -53.9 NC_002577.1 + 11815 0.67 0.944099
Target:  5'- aCGAc-GCGGGCGAcGACGCGGg-CGAc -3'
miRNA:   3'- aGCUuaUGCCCGCU-CUGCGCUgaGUU- -5'
9723 3' -53.9 NC_002577.1 + 4603 0.67 0.944099
Target:  5'- cCGAGUAUGGG--GGGCGCGuGCUCu- -3'
miRNA:   3'- aGCUUAUGCCCgcUCUGCGC-UGAGuu -5'
9723 3' -53.9 NC_002577.1 + 154845 0.68 0.908905
Target:  5'- gCGAAUAUcggggggggggggggGGGgGGGGCGCGGgUCGGg -3'
miRNA:   3'- aGCUUAUG---------------CCCgCUCUGCGCUgAGUU- -5'
9723 3' -53.9 NC_002577.1 + 142491 0.68 0.899435
Target:  5'- gCGAAUAUcggggggggggggGGGgGGGGCGCGGgUCGGg -3'
miRNA:   3'- aGCUUAUG-------------CCCgCUCUGCGCUgAGUU- -5'
9723 3' -53.9 NC_002577.1 + 91007 0.7 0.815637
Target:  5'- gCGAAUGCGGGgGAG-CGuCGACcCAc -3'
miRNA:   3'- aGCUUAUGCCCgCUCuGC-GCUGaGUu -5'
9723 3' -53.9 NC_002577.1 + 162968 0.74 0.649566
Target:  5'- cUCGGGgggggGgGGGgGGGGCGCGACUCc- -3'
miRNA:   3'- -AGCUUa----UgCCCgCUCUGCGCUGAGuu -5'
9723 3' -53.9 NC_002577.1 + 129010 0.74 0.628893
Target:  5'- cCGAGUAUGGG-GGGGCGCGuGCUCu- -3'
miRNA:   3'- aGCUUAUGCCCgCUCUGCGC-UGAGuu -5'
9723 3' -53.9 NC_002577.1 + 134359 0.79 0.363171
Target:  5'- cUCGGGgggggGgGGGgGGGGCGCGACUCAAg -3'
miRNA:   3'- -AGCUUa----UgCCCgCUCUGCGCUGAGUU- -5'
9723 3' -53.9 NC_002577.1 + 57783 1.07 0.006455
Target:  5'- aUCGAAUACGGGCGAGACGCGACUCAAa -3'
miRNA:   3'- -AGCUUAUGCCCGCUCUGCGCUGAGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.