Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9724 | 3' | -54.2 | NC_002577.1 | + | 11118 | 0.67 | 0.932801 |
Target: 5'- gCUUCCCgauUGGCCcgGACgGGCguucGCa -3' miRNA: 3'- -GAAGGGau-ACCGGa-CUGgCUGaa--CGg -5' |
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9724 | 3' | -54.2 | NC_002577.1 | + | 27154 | 0.66 | 0.949969 |
Target: 5'- ---gCCUGUGGCCacuggccgGACCGagaaccuuccaccuGCUUGCUc -3' miRNA: 3'- gaagGGAUACCGGa-------CUGGC--------------UGAACGG- -5' |
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9724 | 3' | -54.2 | NC_002577.1 | + | 34079 | 0.68 | 0.910523 |
Target: 5'- --aCCCUGUGGUgaGAgCCGugUaGCUg -3' miRNA: 3'- gaaGGGAUACCGgaCU-GGCugAaCGG- -5' |
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9724 | 3' | -54.2 | NC_002577.1 | + | 58828 | 1.11 | 0.003233 |
Target: 5'- cCUUCCCUAUGGCCUGACCGACUUGCCc -3' miRNA: 3'- -GAAGGGAUACCGGACUGGCUGAACGG- -5' |
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9724 | 3' | -54.2 | NC_002577.1 | + | 105754 | 0.66 | 0.946972 |
Target: 5'- -gUCCC-AUGGCC--ACaCGACggGCCg -3' miRNA: 3'- gaAGGGaUACCGGacUG-GCUGaaCGG- -5' |
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9724 | 3' | -54.2 | NC_002577.1 | + | 122495 | 0.67 | 0.932801 |
Target: 5'- gCUUCCCgauUGGCCcgGACgGGCguucGCa -3' miRNA: 3'- -GAAGGGau-ACCGGa-CUGgCUGaa--CGg -5' |
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9724 | 3' | -54.2 | NC_002577.1 | + | 161284 | 0.66 | 0.959014 |
Target: 5'- -gUCCg-AUGGCCUGGCCGccccgauCUaGCUa -3' miRNA: 3'- gaAGGgaUACCGGACUGGCu------GAaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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