miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9725 5' -50 NC_002577.1 + 124486 0.66 0.998684
Target:  5'- aCUGUACGcGA---GGGCUaagAGCGGGCGa -3'
miRNA:   3'- -GGUAUGCuUUuguUCUGG---UCGCCCGC- -5'
9725 5' -50 NC_002577.1 + 9127 0.66 0.998684
Target:  5'- aCUGUACGcGA---GGGCUaagAGCGGGCGa -3'
miRNA:   3'- -GGUAUGCuUUuguUCUGG---UCGCCCGC- -5'
9725 5' -50 NC_002577.1 + 100757 0.66 0.998633
Target:  5'- gCGUACGccccacugccGCAGGACCGGUGGcCGu -3'
miRNA:   3'- gGUAUGCuuu-------UGUUCUGGUCGCCcGC- -5'
9725 5' -50 NC_002577.1 + 162670 0.66 0.998413
Target:  5'- ----uUGAGGACAAuGAgCGGCGGGuCGg -3'
miRNA:   3'- gguauGCUUUUGUU-CUgGUCGCCC-GC- -5'
9725 5' -50 NC_002577.1 + 150672 0.66 0.998413
Target:  5'- uCCAUACGuaaucauAGGCGGGAauacacuuucCUGGaCGGGCGu -3'
miRNA:   3'- -GGUAUGCu------UUUGUUCU----------GGUC-GCCCGC- -5'
9725 5' -50 NC_002577.1 + 158410 0.66 0.998097
Target:  5'- gCGUGCG-GGACGAGAgCCGugGGGCGu -3'
miRNA:   3'- gGUAUGCuUUUGUUCU-GGUcgCCCGC- -5'
9725 5' -50 NC_002577.1 + 122435 0.66 0.998097
Target:  5'- -aAUACGcGAGCgGAGGuCCGGCGGGg- -3'
miRNA:   3'- ggUAUGCuUUUG-UUCU-GGUCGCCCgc -5'
9725 5' -50 NC_002577.1 + 4132 0.66 0.998097
Target:  5'- aCCGUACc---AC-GGACCauccgaacGGCGGGCGa -3'
miRNA:   3'- -GGUAUGcuuuUGuUCUGG--------UCGCCCGC- -5'
9725 5' -50 NC_002577.1 + 138927 0.66 0.998097
Target:  5'- gCGUGCG-GGACGAGAgCCGugGGGCGu -3'
miRNA:   3'- gGUAUGCuUUUGUUCU-GGUcgCCCGC- -5'
9725 5' -50 NC_002577.1 + 129481 0.66 0.998097
Target:  5'- aCCGUACc---AC-GGACCauccgaacGGCGGGCGa -3'
miRNA:   3'- -GGUAUGcuuuUGuUCUGG--------UCGCCCGC- -5'
9725 5' -50 NC_002577.1 + 11179 0.66 0.998097
Target:  5'- -aAUACGcGAGCgGAGGuCCGGCGGGg- -3'
miRNA:   3'- ggUAUGCuUUUG-UUCU-GGUCGCCCgc -5'
9725 5' -50 NC_002577.1 + 11807 0.66 0.997729
Target:  5'- cCCGgGCGAcGACGcGGGCgAcgacGCGGGCGa -3'
miRNA:   3'- -GGUaUGCUuUUGU-UCUGgU----CGCCCGC- -5'
9725 5' -50 NC_002577.1 + 79786 0.66 0.997729
Target:  5'- aUAUGCGGAGGCAucgcGACCAGCc-GCa -3'
miRNA:   3'- gGUAUGCUUUUGUu---CUGGUCGccCGc -5'
9725 5' -50 NC_002577.1 + 151 0.66 0.997304
Target:  5'- gCCAUAgccccgaccgUGAAAugAGGcCCGGCGaGGCc -3'
miRNA:   3'- -GGUAU----------GCUUUugUUCuGGUCGC-CCGc -5'
9725 5' -50 NC_002577.1 + 133462 0.66 0.997304
Target:  5'- gCCAUAgccccgaccgUGAAAugAGGcCCGGCGaGGCc -3'
miRNA:   3'- -GGUAU----------GCUUUugUUCuGGUCGC-CCGc -5'
9725 5' -50 NC_002577.1 + 161911 0.66 0.997304
Target:  5'- ---aACGuGAACGAcGACUGGCuGGGCGu -3'
miRNA:   3'- gguaUGCuUUUGUU-CUGGUCG-CCCGC- -5'
9725 5' -50 NC_002577.1 + 96507 0.66 0.997304
Target:  5'- cCCAUAUGcAGucACGGGugCAuuaCGGGCGg -3'
miRNA:   3'- -GGUAUGCuUU--UGUUCugGUc--GCCCGC- -5'
9725 5' -50 NC_002577.1 + 135427 0.66 0.997304
Target:  5'- ---aACGuGAACGAcGACUGGCuGGGCGu -3'
miRNA:   3'- gguaUGCuUUUGUU-CUGGUCG-CCCGC- -5'
9725 5' -50 NC_002577.1 + 123091 0.67 0.996814
Target:  5'- ---cGCGGGuGCGGGGCCGGgGGGa- -3'
miRNA:   3'- gguaUGCUUuUGUUCUGGUCgCCCgc -5'
9725 5' -50 NC_002577.1 + 98552 0.67 0.996814
Target:  5'- aCGgguUGAAAGCAAuGACCGG-GGGUGu -3'
miRNA:   3'- gGUau-GCUUUUGUU-CUGGUCgCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.