miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9726 5' -52.3 NC_002577.1 + 31782 0.66 0.986536
Target:  5'- cGUGCuggcguuuUUCACCGUA-CUGAuuguaGCGGg -3'
miRNA:   3'- -CACGuu------AAGUGGCGUcGACUug---CGCC- -5'
9726 5' -52.3 NC_002577.1 + 124768 0.66 0.984806
Target:  5'- -cGCGcg-CACCGCGGgcCUcGGCGCGGu -3'
miRNA:   3'- caCGUuaaGUGGCGUC--GAcUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 8846 0.66 0.984806
Target:  5'- -cGCGcg-CACCGCGGgcCUcGGCGCGGu -3'
miRNA:   3'- caCGUuaaGUGGCGUC--GAcUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 23684 0.66 0.982911
Target:  5'- aUGCAGUUaaguaauCCGCGauuuGUUGuGCGCGGg -3'
miRNA:   3'- cACGUUAAgu-----GGCGU----CGACuUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 72537 0.66 0.982911
Target:  5'- -aGCAuagaACCGguGUUGGagGCGUGGg -3'
miRNA:   3'- caCGUuaagUGGCguCGACU--UGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 159741 0.66 0.980842
Target:  5'- aGUGCGAgggggUCGUgGCGGCgcuucuGCGCGGa -3'
miRNA:   3'- -CACGUUa----AGUGgCGUCGacu---UGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 110870 0.66 0.980842
Target:  5'- -aGCAAaaagUCACCGCGGCcuaccGACGUGu -3'
miRNA:   3'- caCGUUa---AGUGGCGUCGac---UUGCGCc -5'
9726 5' -52.3 NC_002577.1 + 137596 0.66 0.980842
Target:  5'- aGUGCGAgggggUCGUgGCGGCgcuucuGCGCGGa -3'
miRNA:   3'- -CACGUUa----AGUGgCGUCGacu---UGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 135058 0.66 0.97812
Target:  5'- -gGCGcGUUCGCCGUAGUguucucccgcaAACGCGGu -3'
miRNA:   3'- caCGU-UAAGUGGCGUCGac---------UUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 162270 0.66 0.97812
Target:  5'- -gGCGcGUUCGCCGUAGUguucucccgcaAACGCGGu -3'
miRNA:   3'- caCGU-UAAGUGGCGUCGac---------UUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 88431 0.67 0.976153
Target:  5'- uGUGCAGUagugCACaCGCAGUUGu-CGCa- -3'
miRNA:   3'- -CACGUUAa---GUG-GCGUCGACuuGCGcc -5'
9726 5' -52.3 NC_002577.1 + 86839 0.67 0.976153
Target:  5'- -aGCGAUccUCGCCGCGGaaaUGGauaGCGCa- -3'
miRNA:   3'- caCGUUA--AGUGGCGUCg--ACU---UGCGcc -5'
9726 5' -52.3 NC_002577.1 + 125234 0.67 0.973517
Target:  5'- -cGCcGUUCGCC-CGGCcGAGCGCccGGa -3'
miRNA:   3'- caCGuUAAGUGGcGUCGaCUUGCG--CC- -5'
9726 5' -52.3 NC_002577.1 + 8380 0.67 0.973517
Target:  5'- -cGCcGUUCGCC-CGGCcGAGCGCccGGa -3'
miRNA:   3'- caCGuUAAGUGGcGUCGaCUUGCG--CC- -5'
9726 5' -52.3 NC_002577.1 + 44796 0.67 0.970674
Target:  5'- uGUGCG----GCCGUGGCUGGaauugcaggAUGCGGa -3'
miRNA:   3'- -CACGUuaagUGGCGUCGACU---------UGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 93558 0.67 0.970674
Target:  5'- -aGCGAgagUCGCguggUGCGGCU--GCGCGGa -3'
miRNA:   3'- caCGUUa--AGUG----GCGUCGAcuUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 138779 0.67 0.96762
Target:  5'- -gGCGuagCGCCGCGGCgguGACgGCGGc -3'
miRNA:   3'- caCGUuaaGUGGCGUCGac-UUG-CGCC- -5'
9726 5' -52.3 NC_002577.1 + 7535 0.67 0.96762
Target:  5'- -aGCGGacaucaCGCCGgGGUcGAACGCGGg -3'
miRNA:   3'- caCGUUaa----GUGGCgUCGaCUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 158558 0.67 0.96762
Target:  5'- -gGCGuagCGCCGCGGCgguGACgGCGGc -3'
miRNA:   3'- caCGUuaaGUGGCGUCGac-UUG-CGCC- -5'
9726 5' -52.3 NC_002577.1 + 126079 0.67 0.96762
Target:  5'- -aGCGGacaucaCGCCGgGGUcGAACGCGGg -3'
miRNA:   3'- caCGUUaa----GUGGCgUCGaCUUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.