miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9726 5' -52.3 NC_002577.1 + 61269 1.11 0.004898
Target:  5'- gGUGCAAUUCACCGCAGCUGAACGCGGa -3'
miRNA:   3'- -CACGUUAAGUGGCGUCGACUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 139538 0.75 0.67693
Target:  5'- cGUGCg---CGCCGCcGCcGGGCGCGGg -3'
miRNA:   3'- -CACGuuaaGUGGCGuCGaCUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 157799 0.75 0.67693
Target:  5'- cGUGCg---CGCCGCcGCcGGGCGCGGg -3'
miRNA:   3'- -CACGuuaaGUGGCGuCGaCUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 98080 0.73 0.748198
Target:  5'- -aGCAcagaACCGCGGCUGu-CGCGGa -3'
miRNA:   3'- caCGUuaagUGGCGUCGACuuGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 45198 0.72 0.823057
Target:  5'- -cGUAAUUCACgGCAGC-GAACGUa- -3'
miRNA:   3'- caCGUUAAGUGgCGUCGaCUUGCGcc -5'
9726 5' -52.3 NC_002577.1 + 152791 0.71 0.871856
Target:  5'- cUGCAGUUCACCG-AGCgu-GCgGCGGc -3'
miRNA:   3'- cACGUUAAGUGGCgUCGacuUG-CGCC- -5'
9726 5' -52.3 NC_002577.1 + 97959 0.71 0.871856
Target:  5'- -aGCAAUUggcggcCGCCGCAGCUGGuaaAUGCa- -3'
miRNA:   3'- caCGUUAA------GUGGCGUCGACU---UGCGcc -5'
9726 5' -52.3 NC_002577.1 + 26316 0.7 0.884271
Target:  5'- cGUGCAGUguucgaagagcucgUgACCGCGGCUuucGAAgccCGCGGa -3'
miRNA:   3'- -CACGUUA--------------AgUGGCGUCGA---CUU---GCGCC- -5'
9726 5' -52.3 NC_002577.1 + 153748 0.7 0.886392
Target:  5'- -gGCAGcUUCG-CGCAGUcgGGGCGCGGa -3'
miRNA:   3'- caCGUU-AAGUgGCGUCGa-CUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 129421 0.7 0.89331
Target:  5'- cUGCGcucgCACagGCAGCUGGGCgGCGGu -3'
miRNA:   3'- cACGUuaa-GUGg-CGUCGACUUG-CGCC- -5'
9726 5' -52.3 NC_002577.1 + 4192 0.7 0.89331
Target:  5'- cUGCGcucgCACagGCAGCUGGGCgGCGGu -3'
miRNA:   3'- cACGUuaa-GUGg-CGUCGACUUG-CGCC- -5'
9726 5' -52.3 NC_002577.1 + 88030 0.69 0.924243
Target:  5'- -aGCAGUUCuugcuuCCGCAGCUGua-GCa- -3'
miRNA:   3'- caCGUUAAGu-----GGCGUCGACuugCGcc -5'
9726 5' -52.3 NC_002577.1 + 11386 0.68 0.953157
Target:  5'- -aGCGAUcccggaucggaCGCCGCGGC-GAACGCGu -3'
miRNA:   3'- caCGUUAa----------GUGGCGUCGaCUUGCGCc -5'
9726 5' -52.3 NC_002577.1 + 73219 0.68 0.953157
Target:  5'- aUGCGA--CACgGCAGCUGGACaCGa -3'
miRNA:   3'- cACGUUaaGUGgCGUCGACUUGcGCc -5'
9726 5' -52.3 NC_002577.1 + 122228 0.68 0.953157
Target:  5'- -aGCGAUcccggaucggaCGCCGCGGC-GAACGCGu -3'
miRNA:   3'- caCGUUAa----------GUGGCGUCGaCUUGCGCc -5'
9726 5' -52.3 NC_002577.1 + 9798 0.68 0.960849
Target:  5'- cGUGCAGguacgCACCGCGGgCUccgucaaacgGAACGCu- -3'
miRNA:   3'- -CACGUUaa---GUGGCGUC-GA----------CUUGCGcc -5'
9726 5' -52.3 NC_002577.1 + 123815 0.68 0.960849
Target:  5'- cGUGCAGguacgCACCGCGGgCUccgucaaacgGAACGCu- -3'
miRNA:   3'- -CACGUUaa---GUGGCGUC-GA----------CUUGCGcc -5'
9726 5' -52.3 NC_002577.1 + 16720 0.67 0.964347
Target:  5'- cUGCGAgccUCACgGCGGCUucuACGCGu -3'
miRNA:   3'- cACGUUa--AGUGgCGUCGAcu-UGCGCc -5'
9726 5' -52.3 NC_002577.1 + 158558 0.67 0.96762
Target:  5'- -gGCGuagCGCCGCGGCgguGACgGCGGc -3'
miRNA:   3'- caCGUuaaGUGGCGUCGac-UUG-CGCC- -5'
9726 5' -52.3 NC_002577.1 + 126079 0.67 0.96762
Target:  5'- -aGCGGacaucaCGCCGgGGUcGAACGCGGg -3'
miRNA:   3'- caCGUUaa----GUGGCgUCGaCUUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.