Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9726 | 5' | -52.3 | NC_002577.1 | + | 4192 | 0.7 | 0.89331 |
Target: 5'- cUGCGcucgCACagGCAGCUGGGCgGCGGu -3' miRNA: 3'- cACGUuaa-GUGg-CGUCGACUUG-CGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 7535 | 0.67 | 0.96762 |
Target: 5'- -aGCGGacaucaCGCCGgGGUcGAACGCGGg -3' miRNA: 3'- caCGUUaa----GUGGCgUCGaCUUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 8380 | 0.67 | 0.973517 |
Target: 5'- -cGCcGUUCGCC-CGGCcGAGCGCccGGa -3' miRNA: 3'- caCGuUAAGUGGcGUCGaCUUGCG--CC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 8846 | 0.66 | 0.984806 |
Target: 5'- -cGCGcg-CACCGCGGgcCUcGGCGCGGu -3' miRNA: 3'- caCGUuaaGUGGCGUC--GAcUUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 9798 | 0.68 | 0.960849 |
Target: 5'- cGUGCAGguacgCACCGCGGgCUccgucaaacgGAACGCu- -3' miRNA: 3'- -CACGUUaa---GUGGCGUC-GA----------CUUGCGcc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 11386 | 0.68 | 0.953157 |
Target: 5'- -aGCGAUcccggaucggaCGCCGCGGC-GAACGCGu -3' miRNA: 3'- caCGUUAa----------GUGGCGUCGaCUUGCGCc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 16720 | 0.67 | 0.964347 |
Target: 5'- cUGCGAgccUCACgGCGGCUucuACGCGu -3' miRNA: 3'- cACGUUa--AGUGgCGUCGAcu-UGCGCc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 23684 | 0.66 | 0.982911 |
Target: 5'- aUGCAGUUaaguaauCCGCGauuuGUUGuGCGCGGg -3' miRNA: 3'- cACGUUAAgu-----GGCGU----CGACuUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 26316 | 0.7 | 0.884271 |
Target: 5'- cGUGCAGUguucgaagagcucgUgACCGCGGCUuucGAAgccCGCGGa -3' miRNA: 3'- -CACGUUA--------------AgUGGCGUCGA---CUU---GCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 31782 | 0.66 | 0.986536 |
Target: 5'- cGUGCuggcguuuUUCACCGUA-CUGAuuguaGCGGg -3' miRNA: 3'- -CACGuu------AAGUGGCGUcGACUug---CGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 44796 | 0.67 | 0.970674 |
Target: 5'- uGUGCG----GCCGUGGCUGGaauugcaggAUGCGGa -3' miRNA: 3'- -CACGUuaagUGGCGUCGACU---------UGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 45198 | 0.72 | 0.823057 |
Target: 5'- -cGUAAUUCACgGCAGC-GAACGUa- -3' miRNA: 3'- caCGUUAAGUGgCGUCGaCUUGCGcc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 61269 | 1.11 | 0.004898 |
Target: 5'- gGUGCAAUUCACCGCAGCUGAACGCGGa -3' miRNA: 3'- -CACGUUAAGUGGCGUCGACUUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 72537 | 0.66 | 0.982911 |
Target: 5'- -aGCAuagaACCGguGUUGGagGCGUGGg -3' miRNA: 3'- caCGUuaagUGGCguCGACU--UGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 73219 | 0.68 | 0.953157 |
Target: 5'- aUGCGA--CACgGCAGCUGGACaCGa -3' miRNA: 3'- cACGUUaaGUGgCGUCGACUUGcGCc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 86839 | 0.67 | 0.976153 |
Target: 5'- -aGCGAUccUCGCCGCGGaaaUGGauaGCGCa- -3' miRNA: 3'- caCGUUA--AGUGGCGUCg--ACU---UGCGcc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 88030 | 0.69 | 0.924243 |
Target: 5'- -aGCAGUUCuugcuuCCGCAGCUGua-GCa- -3' miRNA: 3'- caCGUUAAGu-----GGCGUCGACuugCGcc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 88431 | 0.67 | 0.976153 |
Target: 5'- uGUGCAGUagugCACaCGCAGUUGu-CGCa- -3' miRNA: 3'- -CACGUUAa---GUG-GCGUCGACuuGCGcc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 93558 | 0.67 | 0.970674 |
Target: 5'- -aGCGAgagUCGCguggUGCGGCU--GCGCGGa -3' miRNA: 3'- caCGUUa--AGUG----GCGUCGAcuUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 97959 | 0.71 | 0.871856 |
Target: 5'- -aGCAAUUggcggcCGCCGCAGCUGGuaaAUGCa- -3' miRNA: 3'- caCGUUAA------GUGGCGUCGACU---UGCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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