Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9726 | 5' | -52.3 | NC_002577.1 | + | 98080 | 0.73 | 0.748198 |
Target: 5'- -aGCAcagaACCGCGGCUGu-CGCGGa -3' miRNA: 3'- caCGUuaagUGGCGUCGACuuGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 110870 | 0.66 | 0.980842 |
Target: 5'- -aGCAAaaagUCACCGCGGCcuaccGACGUGu -3' miRNA: 3'- caCGUUa---AGUGGCGUCGac---UUGCGCc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 122228 | 0.68 | 0.953157 |
Target: 5'- -aGCGAUcccggaucggaCGCCGCGGC-GAACGCGu -3' miRNA: 3'- caCGUUAa----------GUGGCGUCGaCUUGCGCc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 123815 | 0.68 | 0.960849 |
Target: 5'- cGUGCAGguacgCACCGCGGgCUccgucaaacgGAACGCu- -3' miRNA: 3'- -CACGUUaa---GUGGCGUC-GA----------CUUGCGcc -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 124768 | 0.66 | 0.984806 |
Target: 5'- -cGCGcg-CACCGCGGgcCUcGGCGCGGu -3' miRNA: 3'- caCGUuaaGUGGCGUC--GAcUUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 125234 | 0.67 | 0.973517 |
Target: 5'- -cGCcGUUCGCC-CGGCcGAGCGCccGGa -3' miRNA: 3'- caCGuUAAGUGGcGUCGaCUUGCG--CC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 126079 | 0.67 | 0.96762 |
Target: 5'- -aGCGGacaucaCGCCGgGGUcGAACGCGGg -3' miRNA: 3'- caCGUUaa----GUGGCgUCGaCUUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 129421 | 0.7 | 0.89331 |
Target: 5'- cUGCGcucgCACagGCAGCUGGGCgGCGGu -3' miRNA: 3'- cACGUuaa-GUGg-CGUCGACUUG-CGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 135058 | 0.66 | 0.97812 |
Target: 5'- -gGCGcGUUCGCCGUAGUguucucccgcaAACGCGGu -3' miRNA: 3'- caCGU-UAAGUGGCGUCGac---------UUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 137596 | 0.66 | 0.980842 |
Target: 5'- aGUGCGAgggggUCGUgGCGGCgcuucuGCGCGGa -3' miRNA: 3'- -CACGUUa----AGUGgCGUCGacu---UGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 138779 | 0.67 | 0.96762 |
Target: 5'- -gGCGuagCGCCGCGGCgguGACgGCGGc -3' miRNA: 3'- caCGUuaaGUGGCGUCGac-UUG-CGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 139538 | 0.75 | 0.67693 |
Target: 5'- cGUGCg---CGCCGCcGCcGGGCGCGGg -3' miRNA: 3'- -CACGuuaaGUGGCGuCGaCUUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 152791 | 0.71 | 0.871856 |
Target: 5'- cUGCAGUUCACCG-AGCgu-GCgGCGGc -3' miRNA: 3'- cACGUUAAGUGGCgUCGacuUG-CGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 153748 | 0.7 | 0.886392 |
Target: 5'- -gGCAGcUUCG-CGCAGUcgGGGCGCGGa -3' miRNA: 3'- caCGUU-AAGUgGCGUCGa-CUUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 157799 | 0.75 | 0.67693 |
Target: 5'- cGUGCg---CGCCGCcGCcGGGCGCGGg -3' miRNA: 3'- -CACGuuaaGUGGCGuCGaCUUGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 158558 | 0.67 | 0.96762 |
Target: 5'- -gGCGuagCGCCGCGGCgguGACgGCGGc -3' miRNA: 3'- caCGUuaaGUGGCGUCGac-UUG-CGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 159741 | 0.66 | 0.980842 |
Target: 5'- aGUGCGAgggggUCGUgGCGGCgcuucuGCGCGGa -3' miRNA: 3'- -CACGUUa----AGUGgCGUCGacu---UGCGCC- -5' |
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9726 | 5' | -52.3 | NC_002577.1 | + | 162270 | 0.66 | 0.97812 |
Target: 5'- -gGCGcGUUCGCCGUAGUguucucccgcaAACGCGGu -3' miRNA: 3'- caCGU-UAAGUGGCGUCGac---------UUGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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