miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9726 5' -52.3 NC_002577.1 + 61269 1.11 0.004898
Target:  5'- gGUGCAAUUCACCGCAGCUGAACGCGGa -3'
miRNA:   3'- -CACGUUAAGUGGCGUCGACUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 162270 0.66 0.97812
Target:  5'- -gGCGcGUUCGCCGUAGUguucucccgcaAACGCGGu -3'
miRNA:   3'- caCGU-UAAGUGGCGUCGac---------UUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 138779 0.67 0.96762
Target:  5'- -gGCGuagCGCCGCGGCgguGACgGCGGc -3'
miRNA:   3'- caCGUuaaGUGGCGUCGac-UUG-CGCC- -5'
9726 5' -52.3 NC_002577.1 + 7535 0.67 0.96762
Target:  5'- -aGCGGacaucaCGCCGgGGUcGAACGCGGg -3'
miRNA:   3'- caCGUUaa----GUGGCgUCGaCUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 11386 0.68 0.953157
Target:  5'- -aGCGAUcccggaucggaCGCCGCGGC-GAACGCGu -3'
miRNA:   3'- caCGUUAa----------GUGGCGUCGaCUUGCGCc -5'
9726 5' -52.3 NC_002577.1 + 88030 0.69 0.924243
Target:  5'- -aGCAGUUCuugcuuCCGCAGCUGua-GCa- -3'
miRNA:   3'- caCGUUAAGu-----GGCGUCGACuugCGcc -5'
9726 5' -52.3 NC_002577.1 + 159741 0.66 0.980842
Target:  5'- aGUGCGAgggggUCGUgGCGGCgcuucuGCGCGGa -3'
miRNA:   3'- -CACGUUa----AGUGgCGUCGacu---UGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 88431 0.67 0.976153
Target:  5'- uGUGCAGUagugCACaCGCAGUUGu-CGCa- -3'
miRNA:   3'- -CACGUUAa---GUG-GCGUCGACuuGCGcc -5'
9726 5' -52.3 NC_002577.1 + 123815 0.68 0.960849
Target:  5'- cGUGCAGguacgCACCGCGGgCUccgucaaacgGAACGCu- -3'
miRNA:   3'- -CACGUUaa---GUGGCGUC-GA----------CUUGCGcc -5'
9726 5' -52.3 NC_002577.1 + 4192 0.7 0.89331
Target:  5'- cUGCGcucgCACagGCAGCUGGGCgGCGGu -3'
miRNA:   3'- cACGUuaa-GUGg-CGUCGACUUG-CGCC- -5'
9726 5' -52.3 NC_002577.1 + 157799 0.75 0.67693
Target:  5'- cGUGCg---CGCCGCcGCcGGGCGCGGg -3'
miRNA:   3'- -CACGuuaaGUGGCGuCGaCUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 8846 0.66 0.984806
Target:  5'- -cGCGcg-CACCGCGGgcCUcGGCGCGGu -3'
miRNA:   3'- caCGUuaaGUGGCGUC--GAcUUGCGCC- -5'
9726 5' -52.3 NC_002577.1 + 97959 0.71 0.871856
Target:  5'- -aGCAAUUggcggcCGCCGCAGCUGGuaaAUGCa- -3'
miRNA:   3'- caCGUUAA------GUGGCGUCGACU---UGCGcc -5'
9726 5' -52.3 NC_002577.1 + 125234 0.67 0.973517
Target:  5'- -cGCcGUUCGCC-CGGCcGAGCGCccGGa -3'
miRNA:   3'- caCGuUAAGUGGcGUCGaCUUGCG--CC- -5'
9726 5' -52.3 NC_002577.1 + 31782 0.66 0.986536
Target:  5'- cGUGCuggcguuuUUCACCGUA-CUGAuuguaGCGGg -3'
miRNA:   3'- -CACGuu------AAGUGGCGUcGACUug---CGCC- -5'
9726 5' -52.3 NC_002577.1 + 110870 0.66 0.980842
Target:  5'- -aGCAAaaagUCACCGCGGCcuaccGACGUGu -3'
miRNA:   3'- caCGUUa---AGUGGCGUCGac---UUGCGCc -5'
9726 5' -52.3 NC_002577.1 + 122228 0.68 0.953157
Target:  5'- -aGCGAUcccggaucggaCGCCGCGGC-GAACGCGu -3'
miRNA:   3'- caCGUUAa----------GUGGCGUCGaCUUGCGCc -5'
9726 5' -52.3 NC_002577.1 + 73219 0.68 0.953157
Target:  5'- aUGCGA--CACgGCAGCUGGACaCGa -3'
miRNA:   3'- cACGUUaaGUGgCGUCGACUUGcGCc -5'
9726 5' -52.3 NC_002577.1 + 9798 0.68 0.960849
Target:  5'- cGUGCAGguacgCACCGCGGgCUccgucaaacgGAACGCu- -3'
miRNA:   3'- -CACGUUaa---GUGGCGUC-GA----------CUUGCGcc -5'
9726 5' -52.3 NC_002577.1 + 16720 0.67 0.964347
Target:  5'- cUGCGAgccUCACgGCGGCUucuACGCGu -3'
miRNA:   3'- cACGUUa--AGUGgCGUCGAcu-UGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.