miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9727 3' -58.9 NC_002577.1 + 66357 0.66 0.824601
Target:  5'- gGCCCGCguggcaGGACUgGUcgGGGCA-AUGGUg -3'
miRNA:   3'- -UGGGCG------CCUGAgCGa-CUCGUcUACCG- -5'
9727 3' -58.9 NC_002577.1 + 117473 0.66 0.816213
Target:  5'- cGCCCGUa-GCUaGUUGAGUAGA-GGCg -3'
miRNA:   3'- -UGGGCGccUGAgCGACUCGUCUaCCG- -5'
9727 3' -58.9 NC_002577.1 + 22114 0.66 0.816213
Target:  5'- -aCCGCGaGGCUUGCUuAGCAGAUc-- -3'
miRNA:   3'- ugGGCGC-CUGAGCGAcUCGUCUAccg -5'
9727 3' -58.9 NC_002577.1 + 162588 0.67 0.77203
Target:  5'- cGCCCGCGGuuUCGgUucccGGGCAGAccGCc -3'
miRNA:   3'- -UGGGCGCCugAGCgA----CUCGUCUacCG- -5'
9727 3' -58.9 NC_002577.1 + 156038 0.67 0.77203
Target:  5'- uGCCCGCGcGGCucccgUCGC-GGGCAGccuugccGGCg -3'
miRNA:   3'- -UGGGCGC-CUG-----AGCGaCUCGUCua-----CCG- -5'
9727 3' -58.9 NC_002577.1 + 134740 0.67 0.77203
Target:  5'- cGCCCGCGGuuUCGgUucccGGGCAGAccGCc -3'
miRNA:   3'- -UGGGCGCCugAGCgA----CUCGUCUacCG- -5'
9727 3' -58.9 NC_002577.1 + 141300 0.67 0.77203
Target:  5'- uGCCCGCGcGGCucccgUCGC-GGGCAGccuugccGGCg -3'
miRNA:   3'- -UGGGCGC-CUG-----AGCGaCUCGUCua-----CCG- -5'
9727 3' -58.9 NC_002577.1 + 161325 0.67 0.762802
Target:  5'- aACCuCGCGGGacgUGCUGGGCcccGUGGUc -3'
miRNA:   3'- -UGG-GCGCCUga-GCGACUCGuc-UACCG- -5'
9727 3' -58.9 NC_002577.1 + 136013 0.67 0.762802
Target:  5'- aACCuCGCGGGacgUGCUGGGCcccGUGGUc -3'
miRNA:   3'- -UGG-GCGCCUga-GCGACUCGuc-UACCG- -5'
9727 3' -58.9 NC_002577.1 + 9335 0.67 0.753464
Target:  5'- gGCCCG-GGGCgcggaCGCggucugagggcuUGAGCcGGUGGCu -3'
miRNA:   3'- -UGGGCgCCUGa----GCG------------ACUCGuCUACCG- -5'
9727 3' -58.9 NC_002577.1 + 124279 0.67 0.753464
Target:  5'- gGCCCG-GGGCgcggaCGCggucugagggcuUGAGCcGGUGGCu -3'
miRNA:   3'- -UGGGCgCCUGa----GCG------------ACUCGuCUACCG- -5'
9727 3' -58.9 NC_002577.1 + 89167 0.67 0.744023
Target:  5'- uGCCCGUGGGuCcCGUccGGCAGGUGuGCu -3'
miRNA:   3'- -UGGGCGCCU-GaGCGacUCGUCUAC-CG- -5'
9727 3' -58.9 NC_002577.1 + 96651 0.68 0.695586
Target:  5'- cGCCUGCGGACgcaCGCauAGCAucGGUGGa -3'
miRNA:   3'- -UGGGCGCCUGa--GCGacUCGU--CUACCg -5'
9727 3' -58.9 NC_002577.1 + 216 0.69 0.605869
Target:  5'- aGCCCGCGGGCUgagUGCaccUGuggcGGCGGGaGGCu -3'
miRNA:   3'- -UGGGCGCCUGA---GCG---AC----UCGUCUaCCG- -5'
9727 3' -58.9 NC_002577.1 + 133398 0.69 0.605869
Target:  5'- aGCCCGCGGGCUgagUGCaccUGuggcGGCGGGaGGCu -3'
miRNA:   3'- -UGGGCGCCUGA---GCG---AC----UCGUCUaCCG- -5'
9727 3' -58.9 NC_002577.1 + 157870 0.7 0.576034
Target:  5'- cCCCGCGGuCUCGacu-GCAGccGGCg -3'
miRNA:   3'- uGGGCGCCuGAGCgacuCGUCuaCCG- -5'
9727 3' -58.9 NC_002577.1 + 139467 0.7 0.576034
Target:  5'- cCCCGCGGuCUCGacu-GCAGccGGCg -3'
miRNA:   3'- uGGGCGCCuGAGCgacuCGUCuaCCG- -5'
9727 3' -58.9 NC_002577.1 + 20219 0.73 0.433926
Target:  5'- aGCCCGCguGGACaaUGCcuccuuaUGAGCAGAUGGUu -3'
miRNA:   3'- -UGGGCG--CCUGa-GCG-------ACUCGUCUACCG- -5'
9727 3' -58.9 NC_002577.1 + 139006 0.73 0.400554
Target:  5'- -gCCGCGGAaagCGCgggaggGAGCGcGGUGGCg -3'
miRNA:   3'- ugGGCGCCUga-GCGa-----CUCGU-CUACCG- -5'
9727 3' -58.9 NC_002577.1 + 158331 0.73 0.400554
Target:  5'- -gCCGCGGAaagCGCgggaggGAGCGcGGUGGCg -3'
miRNA:   3'- ugGGCGCCUga-GCGa-----CUCGU-CUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.