miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9727 5' -52 NC_002577.1 + 48876 0.66 0.977074
Target:  5'- uCGUUCGUCUacuaaGcGAccucgACGAGAGCGCAu -3'
miRNA:   3'- uGCGAGCAGA-----CaCU-----UGCUUUCGCGUu -5'
9727 5' -52 NC_002577.1 + 73809 0.66 0.977074
Target:  5'- -gGCUgGUCagaguugcaGUGGuaGCGAAAGCGCAGa -3'
miRNA:   3'- ugCGAgCAGa--------CACU--UGCUUUCGCGUU- -5'
9727 5' -52 NC_002577.1 + 121205 0.67 0.968654
Target:  5'- cCGCg-GUCUGacGAGCGAA-GCGCAAg -3'
miRNA:   3'- uGCGagCAGACa-CUUGCUUuCGCGUU- -5'
9727 5' -52 NC_002577.1 + 62792 0.68 0.954292
Target:  5'- cCGCUUGUCUGUccGACGaAAAGCGUu- -3'
miRNA:   3'- uGCGAGCAGACAc-UUGC-UUUCGCGuu -5'
9727 5' -52 NC_002577.1 + 130380 0.68 0.950103
Target:  5'- gGCGCUCuacUCcG-GGACGAAGGCGCu- -3'
miRNA:   3'- -UGCGAGc--AGaCaCUUGCUUUCGCGuu -5'
9727 5' -52 NC_002577.1 + 3234 0.68 0.950103
Target:  5'- gGCGCUCuacUCcG-GGACGAAGGCGCu- -3'
miRNA:   3'- -UGCGAGc--AGaCaCUUGCUUUCGCGuu -5'
9727 5' -52 NC_002577.1 + 107596 0.68 0.940976
Target:  5'- gGCGaCUCGUUcuUGGACGAaucucgucGAGCGCGGg -3'
miRNA:   3'- -UGC-GAGCAGacACUUGCU--------UUCGCGUU- -5'
9727 5' -52 NC_002577.1 + 3139 0.7 0.9062
Target:  5'- gGCGCgaagCGuUCUGcgggaucgcgugGAACGAGGGCGCAc -3'
miRNA:   3'- -UGCGa---GC-AGACa-----------CUUGCUUUCGCGUu -5'
9727 5' -52 NC_002577.1 + 130475 0.7 0.9062
Target:  5'- gGCGCgaagCGuUCUGcgggaucgcgugGAACGAGGGCGCAc -3'
miRNA:   3'- -UGCGa---GC-AGACa-----------CUUGCUUUCGCGUu -5'
9727 5' -52 NC_002577.1 + 13687 0.7 0.880089
Target:  5'- aAUGC-CGUUUGUGAGCGAuucGGUGCu- -3'
miRNA:   3'- -UGCGaGCAGACACUUGCUu--UCGCGuu -5'
9727 5' -52 NC_002577.1 + 137948 0.74 0.685786
Target:  5'- aGCGCUgCGUCgGUGGGCGAGAGCu--- -3'
miRNA:   3'- -UGCGA-GCAGaCACUUGCUUUCGcguu -5'
9727 5' -52 NC_002577.1 + 159389 0.74 0.685786
Target:  5'- aGCGCUgCGUCgGUGGGCGAGAGCu--- -3'
miRNA:   3'- -UGCGA-GCAGaCACUUGCUUUCGcguu -5'
9727 5' -52 NC_002577.1 + 68163 1.06 0.009894
Target:  5'- uACGCUCGUCUGUGAACGAAAGCGCAAg -3'
miRNA:   3'- -UGCGAGCAGACACUUGCUUUCGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.