miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9728 5' -55.5 NC_002577.1 + 143460 0.66 0.937535
Target:  5'- cGCGagg-UUGUGCaACAGCGCAUCGc -3'
miRNA:   3'- aCGCgauaGGCGCG-UGUCGUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 44677 0.66 0.937535
Target:  5'- cGCGCacgCCGUGCGCuuGaUACAUCaGGg -3'
miRNA:   3'- aCGCGauaGGCGCGUGu-C-GUGUAG-CC- -5'
9728 5' -55.5 NC_002577.1 + 72416 0.66 0.932603
Target:  5'- cGCGCUuaaauugCCGCauuGCAagcCAGUACGUgCGGa -3'
miRNA:   3'- aCGCGAua-----GGCG---CGU---GUCGUGUA-GCC- -5'
9728 5' -55.5 NC_002577.1 + 160788 0.66 0.932603
Target:  5'- aGUGUUGUgC-CGCACGGC-CGUCGu -3'
miRNA:   3'- aCGCGAUAgGcGCGUGUCGuGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 136549 0.66 0.932603
Target:  5'- aGUGUUGUgC-CGCACGGC-CGUCGu -3'
miRNA:   3'- aCGCGAUAgGcGCGUGUCGuGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 106063 0.66 0.932097
Target:  5'- cGCGCcuagggcAUCCGCGUAucuauucCAGUGCAUCa- -3'
miRNA:   3'- aCGCGa------UAGGCGCGU-------GUCGUGUAGcc -5'
9728 5' -55.5 NC_002577.1 + 88660 0.66 0.932097
Target:  5'- --gGCUAUCCGCaugcgggcaacagGCGCGGgACGUUGa -3'
miRNA:   3'- acgCGAUAGGCG-------------CGUGUCgUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 83418 0.66 0.927433
Target:  5'- cGUGCUGagcacUUCGUGCACGGCcaAUCGu -3'
miRNA:   3'- aCGCGAU-----AGGCGCGUGUCGugUAGCc -5'
9728 5' -55.5 NC_002577.1 + 143160 0.66 0.927433
Target:  5'- uUGCGagucguUCCGCGCugGGUGC-UCGc -3'
miRNA:   3'- -ACGCgau---AGGCGCGugUCGUGuAGCc -5'
9728 5' -55.5 NC_002577.1 + 158837 0.66 0.927433
Target:  5'- aUGCGCUGccagaggCCGCGgcCGCGGC-CG-CGGa -3'
miRNA:   3'- -ACGCGAUa------GGCGC--GUGUCGuGUaGCC- -5'
9728 5' -55.5 NC_002577.1 + 157061 0.66 0.927433
Target:  5'- cGCGCgggggCuCGCG-ACGGCGCGaCGGa -3'
miRNA:   3'- aCGCGaua--G-GCGCgUGUCGUGUaGCC- -5'
9728 5' -55.5 NC_002577.1 + 140277 0.66 0.927433
Target:  5'- cGCGCgggggCuCGCG-ACGGCGCGaCGGa -3'
miRNA:   3'- aCGCGaua--G-GCGCgUGUCGUGUaGCC- -5'
9728 5' -55.5 NC_002577.1 + 138500 0.66 0.927433
Target:  5'- aUGCGCUGccagaggCCGCGgcCGCGGC-CG-CGGa -3'
miRNA:   3'- -ACGCGAUa------GGCGC--GUGUCGuGUaGCC- -5'
9728 5' -55.5 NC_002577.1 + 16689 0.66 0.927433
Target:  5'- cGCGCgguUCaguaGuCGCGCuGCGCAauggUCGGg -3'
miRNA:   3'- aCGCGau-AGg---C-GCGUGuCGUGU----AGCC- -5'
9728 5' -55.5 NC_002577.1 + 124292 0.66 0.925836
Target:  5'- -uCGCUcgCCcgcucuuagcccucGCGUACAGUGCGUCGa -3'
miRNA:   3'- acGCGAuaGG--------------CGCGUGUCGUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 9322 0.66 0.925836
Target:  5'- -uCGCUcgCCcgcucuuagcccucGCGUACAGUGCGUCGa -3'
miRNA:   3'- acGCGAuaGG--------------CGCGUGUCGUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 121745 0.66 0.924217
Target:  5'- cGCGCUccgcauccucucggcGUCCggagggGCGCGCGGaucaGCgGUCGGg -3'
miRNA:   3'- aCGCGA---------------UAGG------CGCGUGUCg---UG-UAGCC- -5'
9728 5' -55.5 NC_002577.1 + 295 0.66 0.924217
Target:  5'- gUGUGCUucggucacccacuguGUCCGCGCAaugcuGCGCGUUc- -3'
miRNA:   3'- -ACGCGA---------------UAGGCGCGUgu---CGUGUAGcc -5'
9728 5' -55.5 NC_002577.1 + 133319 0.66 0.924217
Target:  5'- gUGUGCUucggucacccacuguGUCCGCGCAaugcuGCGCGUUc- -3'
miRNA:   3'- -ACGCGA---------------UAGGCGCGUgu---CGUGUAGcc -5'
9728 5' -55.5 NC_002577.1 + 7826 0.66 0.922025
Target:  5'- gGCGCU-UCUGCGU-CuGCGCggCGGa -3'
miRNA:   3'- aCGCGAuAGGCGCGuGuCGUGuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.