miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9728 5' -55.5 NC_002577.1 + 72219 1.11 0.002452
Target:  5'- cUGCGCUAUCCGCGCACAGCACAUCGGg -3'
miRNA:   3'- -ACGCGAUAGGCGCGUGUCGUGUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 66375 0.76 0.428588
Target:  5'- aGCGCUGUCUGCGUAUauggcccgcguggcaGGaCugGUCGGg -3'
miRNA:   3'- aCGCGAUAGGCGCGUG---------------UC-GugUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 96897 0.72 0.646523
Target:  5'- cGCGUcaugacugugGUCCGCGCGCGGaCACgagaccuauuggccGUCGGg -3'
miRNA:   3'- aCGCGa---------UAGGCGCGUGUC-GUG--------------UAGCC- -5'
9728 5' -55.5 NC_002577.1 + 125592 0.72 0.649587
Target:  5'- cUGCGUaUGUCCGcCGCGCAGaCGCAgaagcgcCGGg -3'
miRNA:   3'- -ACGCG-AUAGGC-GCGUGUC-GUGUa------GCC- -5'
9728 5' -55.5 NC_002577.1 + 8022 0.72 0.649587
Target:  5'- cUGCGUaUGUCCGcCGCGCAGaCGCAgaagcgcCGGg -3'
miRNA:   3'- -ACGCG-AUAGGC-GCGUGUC-GUGUa------GCC- -5'
9728 5' -55.5 NC_002577.1 + 72406 0.71 0.700288
Target:  5'- aUGUGCUGUgCGCGgAUAGCGCAgaccaauccaCGGu -3'
miRNA:   3'- -ACGCGAUAgGCGCgUGUCGUGUa---------GCC- -5'
9728 5' -55.5 NC_002577.1 + 101862 0.7 0.739871
Target:  5'- cUGgGCUGcUUCGCcacGCGCAGCACGUCc- -3'
miRNA:   3'- -ACgCGAU-AGGCG---CGUGUCGUGUAGcc -5'
9728 5' -55.5 NC_002577.1 + 160323 0.7 0.749555
Target:  5'- gGCGCgccaCGCGuUGCAGC-CGUCGGg -3'
miRNA:   3'- aCGCGauagGCGC-GUGUCGuGUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 73154 0.7 0.749555
Target:  5'- aGCGUcacCCGCGCACAGCGacCGUCc- -3'
miRNA:   3'- aCGCGauaGGCGCGUGUCGU--GUAGcc -5'
9728 5' -55.5 NC_002577.1 + 137014 0.7 0.749555
Target:  5'- gGCGCgccaCGCGuUGCAGC-CGUCGGg -3'
miRNA:   3'- aCGCGauagGCGC-GUGUCGuGUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 36493 0.7 0.759136
Target:  5'- cGCGUUGcgaugcgCCGCGCAUuGUGCAUCGu -3'
miRNA:   3'- aCGCGAUa------GGCGCGUGuCGUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 163305 0.7 0.777954
Target:  5'- cGCGC-AUgCGCGCACGGguccgcuaCGCAuuUCGGg -3'
miRNA:   3'- aCGCGaUAgGCGCGUGUC--------GUGU--AGCC- -5'
9728 5' -55.5 NC_002577.1 + 45862 0.69 0.796251
Target:  5'- cGgGCggaCCGUuauGCGCGGCAUAUUGGg -3'
miRNA:   3'- aCgCGauaGGCG---CGUGUCGUGUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 136826 0.69 0.805182
Target:  5'- gGCGUUGUCCGCGCcguCGagaacCGCcgCGGg -3'
miRNA:   3'- aCGCGAUAGGCGCGu--GUc----GUGuaGCC- -5'
9728 5' -55.5 NC_002577.1 + 160511 0.69 0.805182
Target:  5'- gGCGUUGUCCGCGCcguCGagaacCGCcgCGGg -3'
miRNA:   3'- aCGCGAUAGGCGCGu--GUc----GUGuaGCC- -5'
9728 5' -55.5 NC_002577.1 + 60048 0.69 0.805182
Target:  5'- aGCGCaUAUUCGCGCaaaaauauaacgACAGcCACGUCa- -3'
miRNA:   3'- aCGCG-AUAGGCGCG------------UGUC-GUGUAGcc -5'
9728 5' -55.5 NC_002577.1 + 121780 0.69 0.813956
Target:  5'- cGCGCgccugcUCCgGCGCGCcgAGCGCG-CGGu -3'
miRNA:   3'- aCGCGau----AGG-CGCGUG--UCGUGUaGCC- -5'
9728 5' -55.5 NC_002577.1 + 102779 0.69 0.822566
Target:  5'- gGCGacAUgCuaGCGCAGCAUAUCGGu -3'
miRNA:   3'- aCGCgaUAgGcgCGUGUCGUGUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 121617 0.69 0.822566
Target:  5'- gUGCGCcucguccgcGUCCGCGCcCGGguCGUCGc -3'
miRNA:   3'- -ACGCGa--------UAGGCGCGuGUCguGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 12081 0.69 0.822566
Target:  5'- gUGCGCcucguccgcGUCCGCGCcCGGguCGUCGc -3'
miRNA:   3'- -ACGCGa--------UAGGCGCGuGUCguGUAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.