miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9728 5' -55.5 NC_002577.1 + 295 0.66 0.924217
Target:  5'- gUGUGCUucggucacccacuguGUCCGCGCAaugcuGCGCGUUc- -3'
miRNA:   3'- -ACGCGA---------------UAGGCGCGUgu---CGUGUAGcc -5'
9728 5' -55.5 NC_002577.1 + 879 0.68 0.847329
Target:  5'- cGUGCaagcacuUCCGCGUACgcgauuguccGGCACGUcCGGa -3'
miRNA:   3'- aCGCGau-----AGGCGCGUG----------UCGUGUA-GCC- -5'
9728 5' -55.5 NC_002577.1 + 2775 0.67 0.910494
Target:  5'- gGCGUga-CCGCGCAU--CGCAUCGa -3'
miRNA:   3'- aCGCGauaGGCGCGUGucGUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 7826 0.66 0.922025
Target:  5'- gGCGCU-UCUGCGU-CuGCGCggCGGa -3'
miRNA:   3'- aCGCGAuAGGCGCGuGuCGUGuaGCC- -5'
9728 5' -55.5 NC_002577.1 + 8022 0.72 0.649587
Target:  5'- cUGCGUaUGUCCGcCGCGCAGaCGCAgaagcgcCGGg -3'
miRNA:   3'- -ACGCG-AUAGGC-GCGUGUC-GUGUa------GCC- -5'
9728 5' -55.5 NC_002577.1 + 9322 0.66 0.925836
Target:  5'- -uCGCUcgCCcgcucuuagcccucGCGUACAGUGCGUCGa -3'
miRNA:   3'- acGCGAuaGG--------------CGCGUGUCGUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 11943 0.68 0.862118
Target:  5'- cGCGCccgGUCCGCGCccucCGGCgucguucucuccgGCGUcCGGg -3'
miRNA:   3'- aCGCGa--UAGGCGCGu---GUCG-------------UGUA-GCC- -5'
9728 5' -55.5 NC_002577.1 + 12081 0.69 0.822566
Target:  5'- gUGCGCcucguccgcGUCCGCGCcCGGguCGUCGc -3'
miRNA:   3'- -ACGCGa--------UAGGCGCGuGUCguGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 16689 0.66 0.927433
Target:  5'- cGCGCgguUCaguaGuCGCGCuGCGCAauggUCGGg -3'
miRNA:   3'- aCGCGau-AGg---C-GCGUGuCGUGU----AGCC- -5'
9728 5' -55.5 NC_002577.1 + 19303 0.67 0.877593
Target:  5'- gGCaagGUCCGCGCGgauucgAGCACAUCGa -3'
miRNA:   3'- aCGcgaUAGGCGCGUg-----UCGUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 23476 0.67 0.877593
Target:  5'- aGCGUUAUggcCCGCGCACAaCAaaucgCGGa -3'
miRNA:   3'- aCGCGAUA---GGCGCGUGUcGUgua--GCC- -5'
9728 5' -55.5 NC_002577.1 + 36493 0.7 0.759136
Target:  5'- cGCGUUGcgaugcgCCGCGCAUuGUGCAUCGu -3'
miRNA:   3'- aCGCGAUa------GGCGCGUGuCGUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 38115 0.66 0.916378
Target:  5'- -cCGC-AUuuGCGUAUGGCGCAcgcuUCGGg -3'
miRNA:   3'- acGCGaUAggCGCGUGUCGUGU----AGCC- -5'
9728 5' -55.5 NC_002577.1 + 44677 0.66 0.937535
Target:  5'- cGCGCacgCCGUGCGCuuGaUACAUCaGGg -3'
miRNA:   3'- aCGCGauaGGCGCGUGu-C-GUGUAG-CC- -5'
9728 5' -55.5 NC_002577.1 + 45862 0.69 0.796251
Target:  5'- cGgGCggaCCGUuauGCGCGGCAUAUUGGg -3'
miRNA:   3'- aCgCGauaGGCG---CGUGUCGUGUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 60048 0.69 0.805182
Target:  5'- aGCGCaUAUUCGCGCaaaaauauaacgACAGcCACGUCa- -3'
miRNA:   3'- aCGCG-AUAGGCGCG------------UGUC-GUGUAGcc -5'
9728 5' -55.5 NC_002577.1 + 66375 0.76 0.428588
Target:  5'- aGCGCUGUCUGCGUAUauggcccgcguggcaGGaCugGUCGGg -3'
miRNA:   3'- aCGCGAUAGGCGCGUG---------------UC-GugUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 72219 1.11 0.002452
Target:  5'- cUGCGCUAUCCGCGCACAGCACAUCGGg -3'
miRNA:   3'- -ACGCGAUAGGCGCGUGUCGUGUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 72406 0.71 0.700288
Target:  5'- aUGUGCUGUgCGCGgAUAGCGCAgaccaauccaCGGu -3'
miRNA:   3'- -ACGCGAUAgGCGCgUGUCGUGUa---------GCC- -5'
9728 5' -55.5 NC_002577.1 + 72416 0.66 0.932603
Target:  5'- cGCGCUuaaauugCCGCauuGCAagcCAGUACGUgCGGa -3'
miRNA:   3'- aCGCGAua-----GGCG---CGU---GUCGUGUA-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.