miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9728 5' -55.5 NC_002577.1 + 72219 1.11 0.002452
Target:  5'- cUGCGCUAUCCGCGCACAGCACAUCGGg -3'
miRNA:   3'- -ACGCGAUAGGCGCGUGUCGUGUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 130838 0.67 0.910494
Target:  5'- gGCGUga-CCGCGCAU--CGCAUCGa -3'
miRNA:   3'- aCGCGauaGGCGCGUGucGUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 159767 0.66 0.916378
Target:  5'- cUGCGCggacccgacgGUCCGgGCGCGGUcg--CGGa -3'
miRNA:   3'- -ACGCGa---------UAGGCgCGUGUCGuguaGCC- -5'
9728 5' -55.5 NC_002577.1 + 143460 0.66 0.937535
Target:  5'- cGCGagg-UUGUGCaACAGCGCAUCGc -3'
miRNA:   3'- aCGCgauaGGCGCG-UGUCGUGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 137014 0.7 0.749555
Target:  5'- gGCGCgccaCGCGuUGCAGC-CGUCGGg -3'
miRNA:   3'- aCGCGauagGCGC-GUGUCGuGUAGCC- -5'
9728 5' -55.5 NC_002577.1 + 136826 0.69 0.805182
Target:  5'- gGCGUUGUCCGCGCcguCGagaacCGCcgCGGg -3'
miRNA:   3'- aCGCGAUAGGCGCGu--GUc----GUGuaGCC- -5'
9728 5' -55.5 NC_002577.1 + 121617 0.69 0.822566
Target:  5'- gUGCGCcucguccgcGUCCGCGCcCGGguCGUCGc -3'
miRNA:   3'- -ACGCGa--------UAGGCGCGuGUCguGUAGCc -5'
9728 5' -55.5 NC_002577.1 + 879 0.68 0.847329
Target:  5'- cGUGCaagcacuUCCGCGUACgcgauuguccGGCACGUcCGGa -3'
miRNA:   3'- aCGCGau-----AGGCGCGUG----------UCGUGUA-GCC- -5'
9728 5' -55.5 NC_002577.1 + 23476 0.67 0.877593
Target:  5'- aGCGUUAUggcCCGCGCACAaCAaaucgCGGa -3'
miRNA:   3'- aCGCGAUA---GGCGCGUGUcGUgua--GCC- -5'
9728 5' -55.5 NC_002577.1 + 139613 0.67 0.898022
Target:  5'- -cCGCUucccagAUgCGCGUugGCAGCACuAUCGGg -3'
miRNA:   3'- acGCGA------UAgGCGCG--UGUCGUG-UAGCC- -5'
9728 5' -55.5 NC_002577.1 + 158142 0.67 0.877593
Target:  5'- cGCGCUcccucCCGCGCuuuccGCGGC-CGUCaGGg -3'
miRNA:   3'- aCGCGAua---GGCGCG-----UGUCGuGUAG-CC- -5'
9728 5' -55.5 NC_002577.1 + 121671 0.68 0.862118
Target:  5'- cGCGCccgGUCCGCGCccucCGGCgucguucucuccgGCGUcCGGg -3'
miRNA:   3'- aCGCGa--UAGGCGCGu---GUCG-------------UGUA-GCC- -5'
9728 5' -55.5 NC_002577.1 + 125592 0.72 0.649587
Target:  5'- cUGCGUaUGUCCGcCGCGCAGaCGCAgaagcgcCGGg -3'
miRNA:   3'- -ACGCG-AUAGGC-GCGUGUC-GUGUa------GCC- -5'
9728 5' -55.5 NC_002577.1 + 102464 0.67 0.884627
Target:  5'- cGCGCaAUgCGCGCGCGGUaggGCcUCGu -3'
miRNA:   3'- aCGCGaUAgGCGCGUGUCG---UGuAGCc -5'
9728 5' -55.5 NC_002577.1 + 101862 0.7 0.739871
Target:  5'- cUGgGCUGcUUCGCcacGCGCAGCACGUCc- -3'
miRNA:   3'- -ACgCGAU-AGGCG---CGUGUCGUGUAGcc -5'
9728 5' -55.5 NC_002577.1 + 104709 0.68 0.855203
Target:  5'- gGCGUcGUCCGCGCAC-GCGCc---- -3'
miRNA:   3'- aCGCGaUAGGCGCGUGuCGUGuagcc -5'
9728 5' -55.5 NC_002577.1 + 121573 0.67 0.898022
Target:  5'- cGgGCaucuUGUaCCGCGCGCucGGCGCGcCGGa -3'
miRNA:   3'- aCgCG----AUA-GGCGCGUG--UCGUGUaGCC- -5'
9728 5' -55.5 NC_002577.1 + 134022 0.67 0.910494
Target:  5'- cGCGC-AUgCGCGCACGGguccgcuaCGCAUuucCGGg -3'
miRNA:   3'- aCGCGaUAgGCGCGUGUC--------GUGUA---GCC- -5'
9728 5' -55.5 NC_002577.1 + 73154 0.7 0.749555
Target:  5'- aGCGUcacCCGCGCACAGCGacCGUCc- -3'
miRNA:   3'- aCGCGauaGGCGCGUGUCGU--GUAGcc -5'
9728 5' -55.5 NC_002577.1 + 102779 0.69 0.822566
Target:  5'- gGCGacAUgCuaGCGCAGCAUAUCGGu -3'
miRNA:   3'- aCGCgaUAgGcgCGUGUCGUGUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.