miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9731 3' -53.2 NC_002577.1 + 136274 0.66 0.980001
Target:  5'- uUCggc-GCUgacCGCGGC-CGGCGUCAUg -3'
miRNA:   3'- -AGauuuUGGa--GCGCUGcGCCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 161064 0.66 0.980001
Target:  5'- uUCggc-GCUgacCGCGGC-CGGCGUCAUg -3'
miRNA:   3'- -AGauuuUGGa--GCGCUGcGCCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 119273 0.66 0.980001
Target:  5'- cCUAAuguACCggCaCGugGUGuGCGUCACg -3'
miRNA:   3'- aGAUUu--UGGa-GcGCugCGC-CGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 95740 0.66 0.977709
Target:  5'- uUCUGGggUCUCGaUGcCGUgaacucaagucGGCGUCACu -3'
miRNA:   3'- -AGAUUuuGGAGC-GCuGCG-----------CCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 161386 0.66 0.977709
Target:  5'- --gAAAACCcCGCGGC-CGGCGaCAUc -3'
miRNA:   3'- agaUUUUGGaGCGCUGcGCCGCaGUG- -5'
9731 3' -53.2 NC_002577.1 + 135952 0.66 0.977709
Target:  5'- --gAAAACCcCGCGGC-CGGCGaCAUc -3'
miRNA:   3'- agaUUUUGGaGCGCUGcGCCGCaGUG- -5'
9731 3' -53.2 NC_002577.1 + 70953 0.66 0.97523
Target:  5'- aUCgc--GCCUaCGCGACGCGaguuGCG-CGCg -3'
miRNA:   3'- -AGauuuUGGA-GCGCUGCGC----CGCaGUG- -5'
9731 3' -53.2 NC_002577.1 + 16932 0.66 0.972554
Target:  5'- -gUGAGACgCUCGCuGCGCGGCa---- -3'
miRNA:   3'- agAUUUUG-GAGCGcUGCGCCGcagug -5'
9731 3' -53.2 NC_002577.1 + 123720 0.66 0.970852
Target:  5'- cUCUAuu-CCcCGCauuaccacauggacgGGcCGCGGCGUCGCg -3'
miRNA:   3'- -AGAUuuuGGaGCG---------------CU-GCGCCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 9894 0.66 0.970852
Target:  5'- cUCUAuu-CCcCGCauuaccacauggacgGGcCGCGGCGUCGCg -3'
miRNA:   3'- -AGAUuuuGGaGCG---------------CU-GCGCCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 33318 0.66 0.969676
Target:  5'- cUCUAugagcGCuCUCGCGA-GCGGCucGUUACg -3'
miRNA:   3'- -AGAUuu---UG-GAGCGCUgCGCCG--CAGUG- -5'
9731 3' -53.2 NC_002577.1 + 104690 0.67 0.966589
Target:  5'- -----cGCCUgCGUGAcgaucCGCGGCGUCGu -3'
miRNA:   3'- agauuuUGGA-GCGCU-----GCGCCGCAGUg -5'
9731 3' -53.2 NC_002577.1 + 159669 0.67 0.966589
Target:  5'- aUUUGAAAUag-GCGAUGCcgaggGGCGUCGCa -3'
miRNA:   3'- -AGAUUUUGgagCGCUGCG-----CCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 137669 0.67 0.966589
Target:  5'- aUUUGAAAUag-GCGAUGCcgaggGGCGUCGCa -3'
miRNA:   3'- -AGAUUUUGgagCGCUGCG-----CCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 160689 0.67 0.963286
Target:  5'- --gGGAACCguccauaaUGCG-CGCGGgGUCGCg -3'
miRNA:   3'- agaUUUUGGa-------GCGCuGCGCCgCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 136649 0.67 0.963286
Target:  5'- --gGGAACCguccauaaUGCG-CGCGGgGUCGCg -3'
miRNA:   3'- agaUUUUGGa-------GCGCuGCGCCgCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 66028 0.67 0.959762
Target:  5'- gUUUGAGGCCaaaUGCGGCGCGGCu---- -3'
miRNA:   3'- -AGAUUUUGGa--GCGCUGCGCCGcagug -5'
9731 3' -53.2 NC_002577.1 + 159771 0.67 0.952031
Target:  5'- aUUGAAGgC-CGCGACGCcccGGCG-CACg -3'
miRNA:   3'- aGAUUUUgGaGCGCUGCG---CCGCaGUG- -5'
9731 3' -53.2 NC_002577.1 + 137567 0.67 0.952031
Target:  5'- aUUGAAGgC-CGCGACGCcccGGCG-CACg -3'
miRNA:   3'- aGAUUUUgGaGCGCUGCG---CCGCaGUG- -5'
9731 3' -53.2 NC_002577.1 + 4802 0.67 0.951621
Target:  5'- ---cAAACgUCGgacgggaCGGCGCGGCGUCGu -3'
miRNA:   3'- agauUUUGgAGC-------GCUGCGCCGCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.