Results 21 - 40 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 161431 | 0.68 | 0.947816 |
Target: 5'- gUCcGAuACaaggUCGCGACGCGacuggaccGCGUCGCg -3' miRNA: 3'- -AGaUUuUGg---AGCGCUGCGC--------CGCAGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 68030 | 0.68 | 0.928019 |
Target: 5'- aCUGAAugCggcaggCGCGugGCugugcaugucuacGGCGUCAa -3' miRNA: 3'- aGAUUUugGa-----GCGCugCG-------------CCGCAGUg -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 135907 | 0.68 | 0.947816 |
Target: 5'- gUCcGAuACaaggUCGCGACGCGacuggaccGCGUCGCg -3' miRNA: 3'- -AGaUUuUGg---AGCGCUGCGC--------CGCAGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 55104 | 0.68 | 0.943362 |
Target: 5'- aCUAuuuGGACCUCGCGAcuCGCaGCGcUACc -3' miRNA: 3'- aGAU---UUUGGAGCGCU--GCGcCGCaGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 123029 | 0.68 | 0.947816 |
Target: 5'- uUCggccGCgUCGcCGACGCGGgGUCGg -3' miRNA: 3'- -AGauuuUGgAGC-GCUGCGCCgCAGUg -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 137567 | 0.67 | 0.952031 |
Target: 5'- aUUGAAGgC-CGCGACGCcccGGCG-CACg -3' miRNA: 3'- aGAUUUUgGaGCGCUGCG---CCGCaGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 66028 | 0.67 | 0.959762 |
Target: 5'- gUUUGAGGCCaaaUGCGGCGCGGCu---- -3' miRNA: 3'- -AGAUUUUGGa--GCGCUGCGCCGcagug -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 136649 | 0.67 | 0.963286 |
Target: 5'- --gGGAACCguccauaaUGCG-CGCGGgGUCGCg -3' miRNA: 3'- agaUUUUGGa-------GCGCuGCGCCgCAGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 104690 | 0.67 | 0.966589 |
Target: 5'- -----cGCCUgCGUGAcgaucCGCGGCGUCGu -3' miRNA: 3'- agauuuUGGA-GCGCU-----GCGCCGCAGUg -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 137669 | 0.67 | 0.966589 |
Target: 5'- aUUUGAAAUag-GCGAUGCcgaggGGCGUCGCa -3' miRNA: 3'- -AGAUUUUGgagCGCUGCG-----CCGCAGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 128811 | 0.67 | 0.951621 |
Target: 5'- ---cAAACgUCGgacgggaCGGCGCGGCGUCGu -3' miRNA: 3'- agauUUUGgAGC-------GCUGCGCCGCAGUg -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 4802 | 0.67 | 0.951621 |
Target: 5'- ---cAAACgUCGgacgggaCGGCGCGGCGUCGu -3' miRNA: 3'- agauUUUGgAGC-------GCUGCGCCGCAGUg -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 159771 | 0.67 | 0.952031 |
Target: 5'- aUUGAAGgC-CGCGACGCcccGGCG-CACg -3' miRNA: 3'- aGAUUUUgGaGCGCUGCG---CCGCaGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 160689 | 0.67 | 0.963286 |
Target: 5'- --gGGAACCguccauaaUGCG-CGCGGgGUCGCg -3' miRNA: 3'- agaUUUUGGa-------GCGCuGCGCCgCAGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 159669 | 0.67 | 0.966589 |
Target: 5'- aUUUGAAAUag-GCGAUGCcgaggGGCGUCGCa -3' miRNA: 3'- -AGAUUUUGgagCGCUGCG-----CCGCAGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 95740 | 0.66 | 0.977709 |
Target: 5'- uUCUGGggUCUCGaUGcCGUgaacucaagucGGCGUCACu -3' miRNA: 3'- -AGAUUuuGGAGC-GCuGCG-----------CCGCAGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 135952 | 0.66 | 0.977709 |
Target: 5'- --gAAAACCcCGCGGC-CGGCGaCAUc -3' miRNA: 3'- agaUUUUGGaGCGCUGcGCCGCaGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 16932 | 0.66 | 0.972554 |
Target: 5'- -gUGAGACgCUCGCuGCGCGGCa---- -3' miRNA: 3'- agAUUUUG-GAGCGcUGCGCCGcagug -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 123720 | 0.66 | 0.970852 |
Target: 5'- cUCUAuu-CCcCGCauuaccacauggacgGGcCGCGGCGUCGCg -3' miRNA: 3'- -AGAUuuuGGaGCG---------------CU-GCGCCGCAGUG- -5' |
|||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 161064 | 0.66 | 0.980001 |
Target: 5'- uUCggc-GCUgacCGCGGC-CGGCGUCAUg -3' miRNA: 3'- -AGauuuUGGa--GCGCUGcGCCGCAGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home