Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 546 | 0.71 | 0.822808 |
Target: 5'- gUUAGGGCCUCuCGGgGuCGGCGUCAg -3' miRNA: 3'- aGAUUUUGGAGcGCUgC-GCCGCAGUg -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 4802 | 0.67 | 0.951621 |
Target: 5'- ---cAAACgUCGgacgggaCGGCGCGGCGUCGu -3' miRNA: 3'- agauUUUGgAGC-------GCUGCGCCGCAGUg -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 9894 | 0.66 | 0.970852 |
Target: 5'- cUCUAuu-CCcCGCauuaccacauggacgGGcCGCGGCGUCGCg -3' miRNA: 3'- -AGAUuuuGGaGCG---------------CU-GCGCCGCAGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 10585 | 0.68 | 0.947816 |
Target: 5'- uUCggccGCgUCGcCGACGCGGgGUCGg -3' miRNA: 3'- -AGauuuUGgAGC-GCUGCGCCgCAGUg -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 11590 | 0.74 | 0.678544 |
Target: 5'- --cGAAACCUaCGCGucgcCGCGGCGUC-Cg -3' miRNA: 3'- agaUUUUGGA-GCGCu---GCGCCGCAGuG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 16932 | 0.66 | 0.972554 |
Target: 5'- -gUGAGACgCUCGCuGCGCGGCa---- -3' miRNA: 3'- agAUUUUG-GAGCGcUGCGCCGcagug -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 17033 | 0.7 | 0.863554 |
Target: 5'- gUCUaAAAGCgUgGCGGCGCGGC-UCAa -3' miRNA: 3'- -AGA-UUUUGgAgCGCUGCGCCGcAGUg -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 33318 | 0.66 | 0.969676 |
Target: 5'- cUCUAugagcGCuCUCGCGA-GCGGCucGUUACg -3' miRNA: 3'- -AGAUuu---UG-GAGCGCUgCGCCG--CAGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 35995 | 0.71 | 0.805217 |
Target: 5'- -aUGAAuGCCUCGCG-CGCGGCGg--- -3' miRNA: 3'- agAUUU-UGGAGCGCuGCGCCGCagug -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 55039 | 0.69 | 0.898995 |
Target: 5'- aUUUuGAGCCUCauCGGCuGCGGCGUCGg -3' miRNA: 3'- -AGAuUUUGGAGc-GCUG-CGCCGCAGUg -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 55104 | 0.68 | 0.943362 |
Target: 5'- aCUAuuuGGACCUCGCGAcuCGCaGCGcUACc -3' miRNA: 3'- aGAU---UUUGGAGCGCU--GCGcCGCaGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 62001 | 0.69 | 0.892365 |
Target: 5'- aCUAAAAucguCCUCG-GGCGCGcCGUCGCc -3' miRNA: 3'- aGAUUUU----GGAGCgCUGCGCcGCAGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 66028 | 0.67 | 0.959762 |
Target: 5'- gUUUGAGGCCaaaUGCGGCGCGGCu---- -3' miRNA: 3'- -AGAUUUUGGa--GCGCUGCGCCGcagug -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 68030 | 0.68 | 0.928019 |
Target: 5'- aCUGAAugCggcaggCGCGugGCugugcaugucuacGGCGUCAa -3' miRNA: 3'- aGAUUUugGa-----GCGCugCG-------------CCGCAGUg -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 70953 | 0.66 | 0.97523 |
Target: 5'- aUCgc--GCCUaCGCGACGCGaguuGCG-CGCg -3' miRNA: 3'- -AGauuuUGGA-GCGCUGCGC----CGCaGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 75125 | 1.11 | 0.004443 |
Target: 5'- cUCUAAAACCUCGCGACGCGGCGUCACg -3' miRNA: 3'- -AGAUUUUGGAGCGCUGCGCCGCAGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 75324 | 0.7 | 0.855805 |
Target: 5'- aCUGGAAa--CGUGACGCcGCGUCGCg -3' miRNA: 3'- aGAUUUUggaGCGCUGCGcCGCAGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 75679 | 0.73 | 0.719177 |
Target: 5'- gUCUcaag---CGCGAUGCGGCGUCGCc -3' miRNA: 3'- -AGAuuuuggaGCGCUGCGCCGCAGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 95740 | 0.66 | 0.977709 |
Target: 5'- uUCUGGggUCUCGaUGcCGUgaacucaagucGGCGUCACu -3' miRNA: 3'- -AGAUUuuGGAGC-GCuGCG-----------CCGCAGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 104690 | 0.67 | 0.966589 |
Target: 5'- -----cGCCUgCGUGAcgaucCGCGGCGUCGu -3' miRNA: 3'- agauuuUGGA-GCGCU-----GCGCCGCAGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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