Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9731 | 3' | -53.2 | NC_002577.1 | + | 159771 | 0.67 | 0.952031 |
Target: 5'- aUUGAAGgC-CGCGACGCcccGGCG-CACg -3' miRNA: 3'- aGAUUUUgGaGCGCUGCG---CCGCaGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 160689 | 0.67 | 0.963286 |
Target: 5'- --gGGAACCguccauaaUGCG-CGCGGgGUCGCg -3' miRNA: 3'- agaUUUUGGa-------GCGCuGCGCCgCAGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 161064 | 0.66 | 0.980001 |
Target: 5'- uUCggc-GCUgacCGCGGC-CGGCGUCAUg -3' miRNA: 3'- -AGauuuUGGa--GCGCUGcGCCGCAGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 161386 | 0.66 | 0.977709 |
Target: 5'- --gAAAACCcCGCGGC-CGGCGaCAUc -3' miRNA: 3'- agaUUUUGGaGCGCUGcGCCGCaGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 161431 | 0.68 | 0.947816 |
Target: 5'- gUCcGAuACaaggUCGCGACGCGacuggaccGCGUCGCg -3' miRNA: 3'- -AGaUUuUGg---AGCGCUGCGC--------CGCAGUG- -5' |
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9731 | 3' | -53.2 | NC_002577.1 | + | 161643 | 0.84 | 0.220042 |
Target: 5'- aUUGGGACCgUCGCGACGCGGUccaGUCGCg -3' miRNA: 3'- aGAUUUUGG-AGCGCUGCGCCG---CAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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