miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9731 3' -53.2 NC_002577.1 + 75125 1.11 0.004443
Target:  5'- cUCUAAAACCUCGCGACGCGGCGUCACg -3'
miRNA:   3'- -AGAUUUUGGAGCGCUGCGCCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 104690 0.67 0.966589
Target:  5'- -----cGCCUgCGUGAcgaucCGCGGCGUCGu -3'
miRNA:   3'- agauuuUGGA-GCGCU-----GCGCCGCAGUg -5'
9731 3' -53.2 NC_002577.1 + 33318 0.66 0.969676
Target:  5'- cUCUAugagcGCuCUCGCGA-GCGGCucGUUACg -3'
miRNA:   3'- -AGAUuu---UG-GAGCGCUgCGCCG--CAGUG- -5'
9731 3' -53.2 NC_002577.1 + 161064 0.66 0.980001
Target:  5'- uUCggc-GCUgacCGCGGC-CGGCGUCAUg -3'
miRNA:   3'- -AGauuuUGGa--GCGCUGcGCCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 115555 0.71 0.813217
Target:  5'- cCUAGAACCUCauugcugGCGucUGCGGCG-CGCg -3'
miRNA:   3'- aGAUUUUGGAG-------CGCu-GCGCCGCaGUG- -5'
9731 3' -53.2 NC_002577.1 + 133068 0.71 0.822808
Target:  5'- gUUAGGGCCUCuCGGgGuCGGCGUCAg -3'
miRNA:   3'- aGAUUUUGGAGcGCUgC-GCCGCAGUg -5'
9731 3' -53.2 NC_002577.1 + 159575 0.7 0.878408
Target:  5'- ----cGACCgcgUGCGcCGgGGCGUCGCg -3'
miRNA:   3'- agauuUUGGa--GCGCuGCgCCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 62001 0.69 0.892365
Target:  5'- aCUAAAAucguCCUCG-GGCGCGcCGUCGCc -3'
miRNA:   3'- aGAUUUU----GGAGCgCUGCGCcGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 161431 0.68 0.947816
Target:  5'- gUCcGAuACaaggUCGCGACGCGacuggaccGCGUCGCg -3'
miRNA:   3'- -AGaUUuUGg---AGCGCUGCGC--------CGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 136649 0.67 0.963286
Target:  5'- --gGGAACCguccauaaUGCG-CGCGGgGUCGCg -3'
miRNA:   3'- agaUUUUGGa-------GCGCuGCGCCgCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 128811 0.67 0.951621
Target:  5'- ---cAAACgUCGgacgggaCGGCGCGGCGUCGu -3'
miRNA:   3'- agauUUUGgAGC-------GCUGCGCCGCAGUg -5'
9731 3' -53.2 NC_002577.1 + 68030 0.68 0.928019
Target:  5'- aCUGAAugCggcaggCGCGugGCugugcaugucuacGGCGUCAa -3'
miRNA:   3'- aGAUUUugGa-----GCGCugCG-------------CCGCAGUg -5'
9731 3' -53.2 NC_002577.1 + 135695 0.84 0.220042
Target:  5'- aUUGGGACCgUCGCGACGCGGUccaGUCGCg -3'
miRNA:   3'- aGAUUUUGG-AGCGCUGCGCCG---CAGUG- -5'
9731 3' -53.2 NC_002577.1 + 137567 0.67 0.952031
Target:  5'- aUUGAAGgC-CGCGACGCcccGGCG-CACg -3'
miRNA:   3'- aGAUUUUgGaGCGCUGCG---CCGCaGUG- -5'
9731 3' -53.2 NC_002577.1 + 122023 0.73 0.729169
Target:  5'- --cGAAACCUaCGCGuucgcCGCGGCGUC-Cg -3'
miRNA:   3'- agaUUUUGGA-GCGCu----GCGCCGCAGuG- -5'
9731 3' -53.2 NC_002577.1 + 159234 0.69 0.903496
Target:  5'- aUCUAugucacgaaguuucGGAgCUCGCacaguucgccgGGCGCGGCcGUCACg -3'
miRNA:   3'- -AGAU--------------UUUgGAGCG-----------CUGCGCCG-CAGUG- -5'
9731 3' -53.2 NC_002577.1 + 66028 0.67 0.959762
Target:  5'- gUUUGAGGCCaaaUGCGGCGCGGCu---- -3'
miRNA:   3'- -AGAUUUUGGa--GCGCUGCGCCGcagug -5'
9731 3' -53.2 NC_002577.1 + 137669 0.67 0.966589
Target:  5'- aUUUGAAAUag-GCGAUGCcgaggGGCGUCGCa -3'
miRNA:   3'- -AGAUUUUGgagCGCUGCG-----CCGCAGUG- -5'
9731 3' -53.2 NC_002577.1 + 35995 0.71 0.805217
Target:  5'- -aUGAAuGCCUCGCG-CGCGGCGg--- -3'
miRNA:   3'- agAUUU-UGGAGCGCuGCGCCGCagug -5'
9731 3' -53.2 NC_002577.1 + 17033 0.7 0.863554
Target:  5'- gUCUaAAAGCgUgGCGGCGCGGC-UCAa -3'
miRNA:   3'- -AGA-UUUUGgAgCGCUGCGCCGcAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.