Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9732 | 3' | -60.8 | NC_002577.1 | + | 126013 | 0.66 | 0.791094 |
Target: 5'- uCCGaacCGUGCGgCGGgaagGCUCcgaguCCGACCGg -3' miRNA: 3'- -GGCa--GCACGCgGCC----UGAG-----GGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 7601 | 0.66 | 0.791094 |
Target: 5'- uCCGaacCGUGCGgCGGgaagGCUCcgaguCCGACCGg -3' miRNA: 3'- -GGCa--GCACGCgGCC----UGAG-----GGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 30587 | 0.66 | 0.782473 |
Target: 5'- cCCGUCGgauugGCGCuCGGucguuACUCCgGGuCUGUu -3' miRNA: 3'- -GGCAGCa----CGCG-GCC-----UGAGGgCU-GGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 19845 | 0.66 | 0.782473 |
Target: 5'- --uUCG-GCGCCGcACUCgCCGACgCGUa -3' miRNA: 3'- ggcAGCaCGCGGCcUGAG-GGCUG-GCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 134281 | 0.66 | 0.773732 |
Target: 5'- gCCGcaCGcUGCauccccGCCGGACaugCCCGccgGCCGCg -3' miRNA: 3'- -GGCa-GC-ACG------CGGCCUGa--GGGC---UGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 163047 | 0.66 | 0.773732 |
Target: 5'- gCCGcaCGcUGCauccccGCCGGACaugCCCGccgGCCGCg -3' miRNA: 3'- -GGCa-GC-ACG------CGGCCUGa--GGGC---UGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 160380 | 0.66 | 0.76488 |
Target: 5'- cCCGgacagGCGCCGGACcUCCGccugucgccaGCUGCa -3' miRNA: 3'- -GGCagca-CGCGGCCUGaGGGC----------UGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 136958 | 0.66 | 0.76488 |
Target: 5'- cCCGgacagGCGCCGGACcUCCGccugucgccaGCUGCa -3' miRNA: 3'- -GGCagca-CGCGGCCUGaGGGC----------UGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 109913 | 0.66 | 0.76488 |
Target: 5'- aCCacuUCGUGCGCauuuuugcgaUGGGuCUCgaCGACCGCg -3' miRNA: 3'- -GGc--AGCACGCG----------GCCU-GAGg-GCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 24447 | 0.66 | 0.763988 |
Target: 5'- gCGUCagcucGCGCCcguucugagaucaGGGCUUCCGugCGUa -3' miRNA: 3'- gGCAGca---CGCGG-------------CCUGAGGGCugGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 96461 | 0.67 | 0.746869 |
Target: 5'- aCCGaugcuaugCGUGCGuCCGcaGGCguucggcagCCUGACCGCu -3' miRNA: 3'- -GGCa-------GCACGC-GGC--CUGa--------GGGCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 138954 | 0.67 | 0.70042 |
Target: 5'- cCCGcCGgGUuCCGGAUUUCCGuuCCGCa -3' miRNA: 3'- -GGCaGCaCGcGGCCUGAGGGCu-GGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 158383 | 0.67 | 0.70042 |
Target: 5'- cCCGcCGgGUuCCGGAUUUCCGuuCCGCa -3' miRNA: 3'- -GGCaGCaCGcGGCCUGAGGGCu-GGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 47052 | 0.68 | 0.690948 |
Target: 5'- aCGUUa-GCGCCuacagguaGACUCCUGACUGCu -3' miRNA: 3'- gGCAGcaCGCGGc-------CUGAGGGCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 122461 | 0.68 | 0.681432 |
Target: 5'- aCCGUCGUucCGCUGGcCggCCCG-CCGUc -3' miRNA: 3'- -GGCAGCAc-GCGGCCuGa-GGGCuGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 141147 | 0.68 | 0.681432 |
Target: 5'- aCCGUgGcGgGaCGGGCUgCCGACCGg -3' miRNA: 3'- -GGCAgCaCgCgGCCUGAgGGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 156191 | 0.68 | 0.681432 |
Target: 5'- aCCGUgGcGgGaCGGGCUgCCGACCGg -3' miRNA: 3'- -GGCAgCaCgCgGCCUGAgGGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 11153 | 0.68 | 0.681432 |
Target: 5'- aCCGUCGUucCGCUGGcCggCCCG-CCGUc -3' miRNA: 3'- -GGCAGCAc-GCGGCCuGa-GGGCuGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 140286 | 0.68 | 0.6623 |
Target: 5'- aUGUUGUgGCGCgCGGggGCUCgCGACgGCg -3' miRNA: 3'- gGCAGCA-CGCG-GCC--UGAGgGCUGgCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 135624 | 0.68 | 0.6623 |
Target: 5'- -aGUCG-GgGCCGGGCggccucuggcgCCCGGCCa- -3' miRNA: 3'- ggCAGCaCgCGGCCUGa----------GGGCUGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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