miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9732 3' -60.8 NC_002577.1 + 76230 1.11 0.001143
Target:  5'- uCCGUCGUGCGCCGGACUCCCGACCGCc -3'
miRNA:   3'- -GGCAGCACGCGGCCUGAGGGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 41377 0.81 0.125273
Target:  5'- aCGUCGUgugGCGCCGGugccACUCCgGACUGCa -3'
miRNA:   3'- gGCAGCA---CGCGGCC----UGAGGgCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 159052 0.75 0.28426
Target:  5'- gCCG-CGgccGCGCCGucCUCCgCGGCCGCg -3'
miRNA:   3'- -GGCaGCa--CGCGGCcuGAGG-GCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 138286 0.75 0.28426
Target:  5'- gCCG-CGgccGCGCCGucCUCCgCGGCCGCg -3'
miRNA:   3'- -GGCaGCa--CGCGGCcuGAGG-GCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 156256 0.75 0.316947
Target:  5'- gCCGaaaggggcUCGUGCGCCGGcaagGCUgCCCGcgacgggaGCCGCg -3'
miRNA:   3'- -GGC--------AGCACGCGGCC----UGA-GGGC--------UGGCG- -5'
9732 3' -60.8 NC_002577.1 + 141082 0.75 0.316947
Target:  5'- gCCGaaaggggcUCGUGCGCCGGcaagGCUgCCCGcgacgggaGCCGCg -3'
miRNA:   3'- -GGC--------AGCACGCGGCC----UGA-GGGC--------UGGCG- -5'
9732 3' -60.8 NC_002577.1 + 158602 0.73 0.374959
Target:  5'- uCCGUCGUcccucGCGCCGGACggCUGACgGa -3'
miRNA:   3'- -GGCAGCA-----CGCGGCCUGagGGCUGgCg -5'
9732 3' -60.8 NC_002577.1 + 138735 0.73 0.374959
Target:  5'- uCCGUCGUcccucGCGCCGGACggCUGACgGa -3'
miRNA:   3'- -GGCAGCA-----CGCGGCCUGagGGCUGgCg -5'
9732 3' -60.8 NC_002577.1 + 136299 0.73 0.382698
Target:  5'- gCCGguggagagCG-GCGCCGGACguuucggCgCUGACCGCg -3'
miRNA:   3'- -GGCa-------GCaCGCGGCCUGa------G-GGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 161039 0.73 0.382698
Target:  5'- gCCGguggagagCG-GCGCCGGACguuucggCgCUGACCGCg -3'
miRNA:   3'- -GGCa-------GCaCGCGGCCUGa------G-GGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 159577 0.72 0.431297
Target:  5'- aCCG-CGUGCGCCgGGGCgUCgCGGCCu- -3'
miRNA:   3'- -GGCaGCACGCGG-CCUG-AGgGCUGGcg -5'
9732 3' -60.8 NC_002577.1 + 137761 0.72 0.431297
Target:  5'- aCCG-CGUGCGCCgGGGCgUCgCGGCCu- -3'
miRNA:   3'- -GGCaGCACGCGG-CCUG-AGgGCUGGcg -5'
9732 3' -60.8 NC_002577.1 + 38030 0.71 0.483322
Target:  5'- aCGUaCGUacCGCUGGGCgCUCGGCCGCa -3'
miRNA:   3'- gGCA-GCAc-GCGGCCUGaGGGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 963 0.71 0.510445
Target:  5'- aUCGUCGUGCGCuccCGGuccuCUCggaaUCGGCUGCg -3'
miRNA:   3'- -GGCAGCACGCG---GCCu---GAG----GGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 132651 0.71 0.510445
Target:  5'- aUCGUCGUGCGCuccCGGuccuCUCggaaUCGGCUGCg -3'
miRNA:   3'- -GGCAGCACGCG---GCCu---GAG----GGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 158069 0.7 0.547544
Target:  5'- gCCGcCGcgGCGCCGG-CUgCagucgaGACCGCg -3'
miRNA:   3'- -GGCaGCa-CGCGGCCuGAgGg-----CUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 125432 0.7 0.547544
Target:  5'- aCCG--GUGCGuCCGGGCgCUCGGCCGg -3'
miRNA:   3'- -GGCagCACGC-GGCCUGaGGGCUGGCg -5'
9732 3' -60.8 NC_002577.1 + 132239 0.7 0.547544
Target:  5'- cCCG-CGUGCgcgaugaagccGCCGu-CUCCCGGCgGCg -3'
miRNA:   3'- -GGCaGCACG-----------CGGCcuGAGGGCUGgCG- -5'
9732 3' -60.8 NC_002577.1 + 8181 0.7 0.547544
Target:  5'- aCCG--GUGCGuCCGGGCgCUCGGCCGg -3'
miRNA:   3'- -GGCagCACGC-GGCCUGaGGGCUGGCg -5'
9732 3' -60.8 NC_002577.1 + 1375 0.7 0.547544
Target:  5'- cCCG-CGUGCgcgaugaagccGCCGu-CUCCCGGCgGCg -3'
miRNA:   3'- -GGCaGCACG-----------CGGCcuGAGGGCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.