Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9732 | 3' | -60.8 | NC_002577.1 | + | 153783 | 0.68 | 0.6623 |
Target: 5'- gCGUCGcGCcgGCCGGGC-CCCGuuUGCc -3' miRNA: 3'- gGCAGCaCG--CGGCCUGaGGGCugGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 161714 | 0.68 | 0.6623 |
Target: 5'- -aGUCG-GgGCCGGGCggccucuggcgCCCGGCCa- -3' miRNA: 3'- ggCAGCaCgCGGCCUGa----------GGGCUGGcg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 135624 | 0.68 | 0.6623 |
Target: 5'- -aGUCG-GgGCCGGGCggccucuggcgCCCGGCCa- -3' miRNA: 3'- ggCAGCaCgCGGCCUGa----------GGGCUGGcg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 11805 | 0.68 | 0.652698 |
Target: 5'- uCCGUCGgaucgGCGCCuu-UUCCCccGCCGCa -3' miRNA: 3'- -GGCAGCa----CGCGGccuGAGGGc-UGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 121808 | 0.68 | 0.652698 |
Target: 5'- uCCGUCGgaucgGCGCCuu-UUCCCccGCCGCa -3' miRNA: 3'- -GGCAGCa----CGCGGccuGAGGGc-UGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 128426 | 0.68 | 0.643082 |
Target: 5'- gCCGUCGUGCGg------UCCGACCGCa -3' miRNA: 3'- -GGCAGCACGCggccugaGGGCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 5187 | 0.68 | 0.643082 |
Target: 5'- gCCGUCGUGCGg------UCCGACCGCa -3' miRNA: 3'- -GGCAGCACGCggccugaGGGCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 19616 | 0.69 | 0.633458 |
Target: 5'- --aUCGcGCGCUGGAUUCgUGACCGa -3' miRNA: 3'- ggcAGCaCGCGGCCUGAGgGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 161512 | 0.69 | 0.633458 |
Target: 5'- gCCcUUGUG-GCCGGGCgCCagaGGCCGCc -3' miRNA: 3'- -GGcAGCACgCGGCCUGaGGg--CUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 135826 | 0.69 | 0.633458 |
Target: 5'- gCCcUUGUG-GCCGGGCgCCagaGGCCGCc -3' miRNA: 3'- -GGcAGCACgCGGCCUGaGGg--CUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 139269 | 0.7 | 0.547544 |
Target: 5'- gCCGcCGcgGCGCCGG-CUgCagucgaGACCGCg -3' miRNA: 3'- -GGCaGCa-CGCGGCCuGAgGg-----CUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 132239 | 0.7 | 0.547544 |
Target: 5'- cCCG-CGUGCgcgaugaagccGCCGu-CUCCCGGCgGCg -3' miRNA: 3'- -GGCaGCACG-----------CGGCcuGAGGGCUGgCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 8181 | 0.7 | 0.547544 |
Target: 5'- aCCG--GUGCGuCCGGGCgCUCGGCCGg -3' miRNA: 3'- -GGCagCACGC-GGCCUGaGGGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 125432 | 0.7 | 0.547544 |
Target: 5'- aCCG--GUGCGuCCGGGCgCUCGGCCGg -3' miRNA: 3'- -GGCagCACGC-GGCCUGaGGGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 1375 | 0.7 | 0.547544 |
Target: 5'- cCCG-CGUGCgcgaugaagccGCCGu-CUCCCGGCgGCg -3' miRNA: 3'- -GGCaGCACG-----------CGGCcuGAGGGCUGgCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 158069 | 0.7 | 0.547544 |
Target: 5'- gCCGcCGcgGCGCCGG-CUgCagucgaGACCGCg -3' miRNA: 3'- -GGCaGCa-CGCGGCCuGAgGg-----CUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 132651 | 0.71 | 0.510445 |
Target: 5'- aUCGUCGUGCGCuccCGGuccuCUCggaaUCGGCUGCg -3' miRNA: 3'- -GGCAGCACGCG---GCCu---GAG----GGCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 963 | 0.71 | 0.510445 |
Target: 5'- aUCGUCGUGCGCuccCGGuccuCUCggaaUCGGCUGCg -3' miRNA: 3'- -GGCAGCACGCG---GCCu---GAG----GGCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 38030 | 0.71 | 0.483322 |
Target: 5'- aCGUaCGUacCGCUGGGCgCUCGGCCGCa -3' miRNA: 3'- gGCA-GCAc-GCGGCCUGaGGGCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 137761 | 0.72 | 0.431297 |
Target: 5'- aCCG-CGUGCGCCgGGGCgUCgCGGCCu- -3' miRNA: 3'- -GGCaGCACGCGG-CCUG-AGgGCUGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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