miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9732 3' -60.8 NC_002577.1 + 963 0.71 0.510445
Target:  5'- aUCGUCGUGCGCuccCGGuccuCUCggaaUCGGCUGCg -3'
miRNA:   3'- -GGCAGCACGCG---GCCu---GAG----GGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 1375 0.7 0.547544
Target:  5'- cCCG-CGUGCgcgaugaagccGCCGu-CUCCCGGCgGCg -3'
miRNA:   3'- -GGCaGCACG-----------CGGCcuGAGGGCUGgCG- -5'
9732 3' -60.8 NC_002577.1 + 5187 0.68 0.643082
Target:  5'- gCCGUCGUGCGg------UCCGACCGCa -3'
miRNA:   3'- -GGCAGCACGCggccugaGGGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 7601 0.66 0.791094
Target:  5'- uCCGaacCGUGCGgCGGgaagGCUCcgaguCCGACCGg -3'
miRNA:   3'- -GGCa--GCACGCgGCC----UGAG-----GGCUGGCg -5'
9732 3' -60.8 NC_002577.1 + 8181 0.7 0.547544
Target:  5'- aCCG--GUGCGuCCGGGCgCUCGGCCGg -3'
miRNA:   3'- -GGCagCACGC-GGCCUGaGGGCUGGCg -5'
9732 3' -60.8 NC_002577.1 + 11153 0.68 0.681432
Target:  5'- aCCGUCGUucCGCUGGcCggCCCG-CCGUc -3'
miRNA:   3'- -GGCAGCAc-GCGGCCuGa-GGGCuGGCG- -5'
9732 3' -60.8 NC_002577.1 + 11805 0.68 0.652698
Target:  5'- uCCGUCGgaucgGCGCCuu-UUCCCccGCCGCa -3'
miRNA:   3'- -GGCAGCa----CGCGGccuGAGGGc-UGGCG- -5'
9732 3' -60.8 NC_002577.1 + 19616 0.69 0.633458
Target:  5'- --aUCGcGCGCUGGAUUCgUGACCGa -3'
miRNA:   3'- ggcAGCaCGCGGCCUGAGgGCUGGCg -5'
9732 3' -60.8 NC_002577.1 + 19845 0.66 0.782473
Target:  5'- --uUCG-GCGCCGcACUCgCCGACgCGUa -3'
miRNA:   3'- ggcAGCaCGCGGCcUGAG-GGCUG-GCG- -5'
9732 3' -60.8 NC_002577.1 + 24447 0.66 0.763988
Target:  5'- gCGUCagcucGCGCCcguucugagaucaGGGCUUCCGugCGUa -3'
miRNA:   3'- gGCAGca---CGCGG-------------CCUGAGGGCugGCG- -5'
9732 3' -60.8 NC_002577.1 + 30587 0.66 0.782473
Target:  5'- cCCGUCGgauugGCGCuCGGucguuACUCCgGGuCUGUu -3'
miRNA:   3'- -GGCAGCa----CGCG-GCC-----UGAGGgCU-GGCG- -5'
9732 3' -60.8 NC_002577.1 + 38030 0.71 0.483322
Target:  5'- aCGUaCGUacCGCUGGGCgCUCGGCCGCa -3'
miRNA:   3'- gGCA-GCAc-GCGGCCUGaGGGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 41377 0.81 0.125273
Target:  5'- aCGUCGUgugGCGCCGGugccACUCCgGACUGCa -3'
miRNA:   3'- gGCAGCA---CGCGGCC----UGAGGgCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 47052 0.68 0.690948
Target:  5'- aCGUUa-GCGCCuacagguaGACUCCUGACUGCu -3'
miRNA:   3'- gGCAGcaCGCGGc-------CUGAGGGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 76230 1.11 0.001143
Target:  5'- uCCGUCGUGCGCCGGACUCCCGACCGCc -3'
miRNA:   3'- -GGCAGCACGCGGCCUGAGGGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 96461 0.67 0.746869
Target:  5'- aCCGaugcuaugCGUGCGuCCGcaGGCguucggcagCCUGACCGCu -3'
miRNA:   3'- -GGCa-------GCACGC-GGC--CUGa--------GGGCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 109913 0.66 0.76488
Target:  5'- aCCacuUCGUGCGCauuuuugcgaUGGGuCUCgaCGACCGCg -3'
miRNA:   3'- -GGc--AGCACGCG----------GCCU-GAGg-GCUGGCG- -5'
9732 3' -60.8 NC_002577.1 + 121808 0.68 0.652698
Target:  5'- uCCGUCGgaucgGCGCCuu-UUCCCccGCCGCa -3'
miRNA:   3'- -GGCAGCa----CGCGGccuGAGGGc-UGGCG- -5'
9732 3' -60.8 NC_002577.1 + 122461 0.68 0.681432
Target:  5'- aCCGUCGUucCGCUGGcCggCCCG-CCGUc -3'
miRNA:   3'- -GGCAGCAc-GCGGCCuGa-GGGCuGGCG- -5'
9732 3' -60.8 NC_002577.1 + 125432 0.7 0.547544
Target:  5'- aCCG--GUGCGuCCGGGCgCUCGGCCGg -3'
miRNA:   3'- -GGCagCACGC-GGCCUGaGGGCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.