Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9732 | 3' | -60.8 | NC_002577.1 | + | 76230 | 1.11 | 0.001143 |
Target: 5'- uCCGUCGUGCGCCGGACUCCCGACCGCc -3' miRNA: 3'- -GGCAGCACGCGGCCUGAGGGCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 141147 | 0.68 | 0.681432 |
Target: 5'- aCCGUgGcGgGaCGGGCUgCCGACCGg -3' miRNA: 3'- -GGCAgCaCgCgGCCUGAgGGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 96461 | 0.67 | 0.746869 |
Target: 5'- aCCGaugcuaugCGUGCGuCCGcaGGCguucggcagCCUGACCGCu -3' miRNA: 3'- -GGCa-------GCACGC-GGC--CUGa--------GGGCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 7601 | 0.66 | 0.791094 |
Target: 5'- uCCGaacCGUGCGgCGGgaagGCUCcgaguCCGACCGg -3' miRNA: 3'- -GGCa--GCACGCgGCC----UGAG-----GGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 161039 | 0.73 | 0.382698 |
Target: 5'- gCCGguggagagCG-GCGCCGGACguuucggCgCUGACCGCg -3' miRNA: 3'- -GGCa-------GCaCGCGGCCUGa------G-GGCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 159577 | 0.72 | 0.431297 |
Target: 5'- aCCG-CGUGCGCCgGGGCgUCgCGGCCu- -3' miRNA: 3'- -GGCaGCACGCGG-CCUG-AGgGCUGGcg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 8181 | 0.7 | 0.547544 |
Target: 5'- aCCG--GUGCGuCCGGGCgCUCGGCCGg -3' miRNA: 3'- -GGCagCACGC-GGCCUGaGGGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 132239 | 0.7 | 0.547544 |
Target: 5'- cCCG-CGUGCgcgaugaagccGCCGu-CUCCCGGCgGCg -3' miRNA: 3'- -GGCaGCACG-----------CGGCcuGAGGGCUGgCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 19616 | 0.69 | 0.633458 |
Target: 5'- --aUCGcGCGCUGGAUUCgUGACCGa -3' miRNA: 3'- ggcAGCaCGCGGCCUGAGgGCUGGCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 122461 | 0.68 | 0.681432 |
Target: 5'- aCCGUCGUucCGCUGGcCggCCCG-CCGUc -3' miRNA: 3'- -GGCAGCAc-GCGGCCuGa-GGGCuGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 121808 | 0.68 | 0.652698 |
Target: 5'- uCCGUCGgaucgGCGCCuu-UUCCCccGCCGCa -3' miRNA: 3'- -GGCAGCa----CGCGGccuGAGGGc-UGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 161512 | 0.69 | 0.633458 |
Target: 5'- gCCcUUGUG-GCCGGGCgCCagaGGCCGCc -3' miRNA: 3'- -GGcAGCACgCGGCCUGaGGg--CUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 138286 | 0.75 | 0.28426 |
Target: 5'- gCCG-CGgccGCGCCGucCUCCgCGGCCGCg -3' miRNA: 3'- -GGCaGCa--CGCGGCcuGAGG-GCUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 135624 | 0.68 | 0.6623 |
Target: 5'- -aGUCG-GgGCCGGGCggccucuggcgCCCGGCCa- -3' miRNA: 3'- ggCAGCaCgCGGCCUGa----------GGGCUGGcg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 141082 | 0.75 | 0.316947 |
Target: 5'- gCCGaaaggggcUCGUGCGCCGGcaagGCUgCCCGcgacgggaGCCGCg -3' miRNA: 3'- -GGC--------AGCACGCGGCC----UGA-GGGC--------UGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 139269 | 0.7 | 0.547544 |
Target: 5'- gCCGcCGcgGCGCCGG-CUgCagucgaGACCGCg -3' miRNA: 3'- -GGCaGCa-CGCGGCCuGAgGg-----CUGGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 157052 | 0.68 | 0.6623 |
Target: 5'- aUGUUGUgGCGCgCGGggGCUCgCGACgGCg -3' miRNA: 3'- gGCAGCA-CGCG-GCC--UGAGgGCUGgCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 138954 | 0.67 | 0.70042 |
Target: 5'- cCCGcCGgGUuCCGGAUUUCCGuuCCGCa -3' miRNA: 3'- -GGCaGCaCGcGGCCUGAGGGCu-GGCG- -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 138735 | 0.73 | 0.374959 |
Target: 5'- uCCGUCGUcccucGCGCCGGACggCUGACgGa -3' miRNA: 3'- -GGCAGCA-----CGCGGCCUGagGGCUGgCg -5' |
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9732 | 3' | -60.8 | NC_002577.1 | + | 132651 | 0.71 | 0.510445 |
Target: 5'- aUCGUCGUGCGCuccCGGuccuCUCggaaUCGGCUGCg -3' miRNA: 3'- -GGCAGCACGCG---GCCu---GAG----GGCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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