miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9733 3' -54.5 NC_002577.1 + 58998 0.66 0.957505
Target:  5'- aGGGAa----GGUCGuuguGGGUGCcGCCGg -3'
miRNA:   3'- -CCCUgaaaaCCAGCu---CUCGCGuCGGC- -5'
9733 3' -54.5 NC_002577.1 + 3123 0.66 0.953658
Target:  5'- cGGGAUcgcgUGGaaCGAGGGCGCAcCCu -3'
miRNA:   3'- -CCCUGaaa-ACCa-GCUCUCGCGUcGGc -5'
9733 3' -54.5 NC_002577.1 + 130491 0.66 0.953658
Target:  5'- cGGGAUcgcgUGGaaCGAGGGCGCAcCCu -3'
miRNA:   3'- -CCCUGaaa-ACCa-GCUCUCGCGUcGGc -5'
9733 3' -54.5 NC_002577.1 + 136306 0.66 0.949582
Target:  5'- uGGGCgggccGGUgGAGAGCGgC-GCCGg -3'
miRNA:   3'- cCCUGaaaa-CCAgCUCUCGC-GuCGGC- -5'
9733 3' -54.5 NC_002577.1 + 161032 0.66 0.949582
Target:  5'- uGGGCgggccGGUgGAGAGCGgC-GCCGg -3'
miRNA:   3'- cCCUGaaaa-CCAgCUCUCGC-GuCGGC- -5'
9733 3' -54.5 NC_002577.1 + 141154 0.66 0.946591
Target:  5'- cGGGACgggcugccgaccggGcGUCGGGGGCaCGGCCa -3'
miRNA:   3'- -CCCUGaaaa----------C-CAGCUCUCGcGUCGGc -5'
9733 3' -54.5 NC_002577.1 + 156184 0.66 0.946591
Target:  5'- cGGGACgggcugccgaccggGcGUCGGGGGCaCGGCCa -3'
miRNA:   3'- -CCCUGaaaa----------C-CAGCUCUCGcGUCGGc -5'
9733 3' -54.5 NC_002577.1 + 103740 0.67 0.937894
Target:  5'- gGGGAgauuggaaucagcuuCUUaUGGUacCGGGGGCGC-GCCGc -3'
miRNA:   3'- -CCCU---------------GAAaACCA--GCUCUCGCGuCGGC- -5'
9733 3' -54.5 NC_002577.1 + 153346 0.67 0.918492
Target:  5'- cGGGcaACcUUUGGUuaaacugcucauacUGAGGGCGCuGCCa -3'
miRNA:   3'- -CCC--UGaAAACCA--------------GCUCUCGCGuCGGc -5'
9733 3' -54.5 NC_002577.1 + 8005 0.68 0.908482
Target:  5'- cGGAUgugcgGGUCGGGGGCGUAGa-- -3'
miRNA:   3'- cCCUGaaaa-CCAGCUCUCGCGUCggc -5'
9733 3' -54.5 NC_002577.1 + 125608 0.68 0.908482
Target:  5'- cGGAUgugcgGGUCGGGGGCGUAGa-- -3'
miRNA:   3'- cCCUGaaaa-CCAGCUCUCGCGUCggc -5'
9733 3' -54.5 NC_002577.1 + 5088 0.68 0.898439
Target:  5'- uGGGACaa--GGUUGGGAGgGCucugggcgaagaaccGGCCGa -3'
miRNA:   3'- -CCCUGaaaaCCAGCUCUCgCG---------------UCGGC- -5'
9733 3' -54.5 NC_002577.1 + 128526 0.68 0.898439
Target:  5'- uGGGACaa--GGUUGGGAGgGCucugggcgaagaaccGGCCGa -3'
miRNA:   3'- -CCCUGaaaaCCAGCUCUCgCG---------------UCGGC- -5'
9733 3' -54.5 NC_002577.1 + 160407 0.68 0.880157
Target:  5'- cGGGGCcgg-GGUCGuaacaaggcuccgcGGAGCGCGaCCGg -3'
miRNA:   3'- -CCCUGaaaaCCAGC--------------UCUCGCGUcGGC- -5'
9733 3' -54.5 NC_002577.1 + 136930 0.68 0.880157
Target:  5'- cGGGGCcgg-GGUCGuaacaaggcuccgcGGAGCGCGaCCGg -3'
miRNA:   3'- -CCCUGaaaaCCAGC--------------UCUCGCGUcGGC- -5'
9733 3' -54.5 NC_002577.1 + 8484 0.7 0.828081
Target:  5'- gGGGugUgugUGGgUGuGcGCGCGGCCGg -3'
miRNA:   3'- -CCCugAaa-ACCaGCuCuCGCGUCGGC- -5'
9733 3' -54.5 NC_002577.1 + 125130 0.7 0.828081
Target:  5'- gGGGugUgugUGGgUGuGcGCGCGGCCGg -3'
miRNA:   3'- -CCCugAaa-ACCaGCuCuCGCGUCGGC- -5'
9733 3' -54.5 NC_002577.1 + 666 0.7 0.819571
Target:  5'- aGGGuCUguuagGGUCGGGGGUuCGGCCu -3'
miRNA:   3'- -CCCuGAaaa--CCAGCUCUCGcGUCGGc -5'
9733 3' -54.5 NC_002577.1 + 132947 0.7 0.819571
Target:  5'- aGGGuCUguuagGGUCGGGGGUuCGGCCu -3'
miRNA:   3'- -CCCuGAaaa--CCAGCUCUCGcGUCGGc -5'
9733 3' -54.5 NC_002577.1 + 112612 0.71 0.79305
Target:  5'- cGGGACcgucgcaGUCGAGAGCGaAGUCGg -3'
miRNA:   3'- -CCCUGaaaac--CAGCUCUCGCgUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.