miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9733 5' -48.1 NC_002577.1 + 97966 0.66 0.999566
Target:  5'- gGCGGCcGCCGcagcUGGUAAAUg--- -3'
miRNA:   3'- gCGCCGaCGGCaua-GCCAUUUAaaau -5'
9733 5' -48.1 NC_002577.1 + 100192 0.67 0.998993
Target:  5'- aGUGGCUGCgCGccuaccgacgaauacGUCGGUAacAAUUUUAg -3'
miRNA:   3'- gCGCCGACG-GCa--------------UAGCCAU--UUAAAAU- -5'
9733 5' -48.1 NC_002577.1 + 89034 0.67 0.998973
Target:  5'- -cUGGCcGCgGUAUCGGUAAAc---- -3'
miRNA:   3'- gcGCCGaCGgCAUAGCCAUUUaaaau -5'
9733 5' -48.1 NC_002577.1 + 40930 0.67 0.998973
Target:  5'- aCGgGGauaGCCGUaAUCGGUAGGUa--- -3'
miRNA:   3'- -GCgCCga-CGGCA-UAGCCAUUUAaaau -5'
9733 5' -48.1 NC_002577.1 + 98071 0.67 0.998973
Target:  5'- cCGCGGCUGUCGcggaaaacaaUGUCGGc-------- -3'
miRNA:   3'- -GCGCCGACGGC----------AUAGCCauuuaaaau -5'
9733 5' -48.1 NC_002577.1 + 105626 0.67 0.998745
Target:  5'- gGaCGGCcGCCGUAcuuugcCGGUGAGUUg-- -3'
miRNA:   3'- gC-GCCGaCGGCAUa-----GCCAUUUAAaau -5'
9733 5' -48.1 NC_002577.1 + 141295 0.68 0.996293
Target:  5'- gCGCGGCUcCCGUcgCGGgcAGc---- -3'
miRNA:   3'- -GCGCCGAcGGCAuaGCCauUUaaaau -5'
9733 5' -48.1 NC_002577.1 + 156043 0.68 0.996293
Target:  5'- gCGCGGCUcCCGUcgCGGgcAGc---- -3'
miRNA:   3'- -GCGCCGAcGGCAuaGCCauUUaaaau -5'
9733 5' -48.1 NC_002577.1 + 85801 0.68 0.995638
Target:  5'- aCGCGGCUcGCCacggCGGUAAAc---- -3'
miRNA:   3'- -GCGCCGA-CGGcauaGCCAUUUaaaau -5'
9733 5' -48.1 NC_002577.1 + 23735 0.69 0.992015
Target:  5'- aUGCGGC-GCUGUGUCGGcUAGu----- -3'
miRNA:   3'- -GCGCCGaCGGCAUAGCC-AUUuaaaau -5'
9733 5' -48.1 NC_002577.1 + 135199 0.7 0.986335
Target:  5'- cCGCGGuCUGCCGUG-CGGa-------- -3'
miRNA:   3'- -GCGCC-GACGGCAUaGCCauuuaaaau -5'
9733 5' -48.1 NC_002577.1 + 152987 0.7 0.986335
Target:  5'- cCGCGGCcGUCGUAacuaCGGUAAGcUUUUGc -3'
miRNA:   3'- -GCGCCGaCGGCAUa---GCCAUUU-AAAAU- -5'
9733 5' -48.1 NC_002577.1 + 162129 0.7 0.986335
Target:  5'- cCGCGGuCUGCCGUG-CGGa-------- -3'
miRNA:   3'- -GCGCC-GACGGCAUaGCCauuuaaaau -5'
9733 5' -48.1 NC_002577.1 + 62502 0.7 0.982526
Target:  5'- gGCGGUUGCCGcAUCGGc-------- -3'
miRNA:   3'- gCGCCGACGGCaUAGCCauuuaaaau -5'
9733 5' -48.1 NC_002577.1 + 80974 0.77 0.811943
Target:  5'- aGCGGCUGCUGUuUUGGgaucugAAGUUUUGa -3'
miRNA:   3'- gCGCCGACGGCAuAGCCa-----UUUAAAAU- -5'
9733 5' -48.1 NC_002577.1 + 76715 1.09 0.017155
Target:  5'- aCGCGGCUGCCGUAUCGGUAAAUUUUAg -3'
miRNA:   3'- -GCGCCGACGGCAUAGCCAUUUAAAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.