miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9734 3' -49 NC_002577.1 + 161611 0.66 0.999367
Target:  5'- cGCGACcuugUAUCGgacguuGCUUCcGCAGCa -3'
miRNA:   3'- cUGCUGca--GUAGCau----CGAAGaUGUCG- -5'
9734 3' -49 NC_002577.1 + 153126 0.66 0.999367
Target:  5'- cGACGACGUUAg---GGUUg--GCAGCg -3'
miRNA:   3'- -CUGCUGCAGUagcaUCGAagaUGUCG- -5'
9734 3' -49 NC_002577.1 + 80900 0.66 0.998831
Target:  5'- -uUGGCGUCucUCGc-GC-UCUGCAGCg -3'
miRNA:   3'- cuGCUGCAGu-AGCauCGaAGAUGUCG- -5'
9734 3' -49 NC_002577.1 + 45936 0.66 0.998583
Target:  5'- uGCGAUGUCGUCcauguugcGUauGGCUUugcccaucaCUACGGCg -3'
miRNA:   3'- cUGCUGCAGUAG--------CA--UCGAA---------GAUGUCG- -5'
9734 3' -49 NC_002577.1 + 159745 0.67 0.998291
Target:  5'- cGAgGGgGUCGUggCGgcGCUUCUGC-GCg -3'
miRNA:   3'- -CUgCUgCAGUA--GCauCGAAGAUGuCG- -5'
9734 3' -49 NC_002577.1 + 137592 0.67 0.998291
Target:  5'- cGAgGGgGUCGUggCGgcGCUUCUGC-GCg -3'
miRNA:   3'- -CUgCUgCAGUA--GCauCGAAGAUGuCG- -5'
9734 3' -49 NC_002577.1 + 68036 0.68 0.995204
Target:  5'- uGCGGCaggCG-CGUGGCUgugcaugUCUACGGCg -3'
miRNA:   3'- cUGCUGca-GUaGCAUCGA-------AGAUGUCG- -5'
9734 3' -49 NC_002577.1 + 145660 0.68 0.993617
Target:  5'- -uCGACGUCGUCGUAaauuaauGCauuccccuucgcugCUACAGCc -3'
miRNA:   3'- cuGCUGCAGUAGCAU-------CGaa------------GAUGUCG- -5'
9734 3' -49 NC_002577.1 + 161496 0.68 0.992626
Target:  5'- cGCGAgGUuaugacCGUCGUAGCUagaUCgggGCGGCc -3'
miRNA:   3'- cUGCUgCA------GUAGCAUCGA---AGa--UGUCG- -5'
9734 3' -49 NC_002577.1 + 52286 0.69 0.991517
Target:  5'- cGCGGCGUCgGUCGUuGCcUCUGCGuaucGCu -3'
miRNA:   3'- cUGCUGCAG-UAGCAuCGaAGAUGU----CG- -5'
9734 3' -49 NC_002577.1 + 115997 0.69 0.990279
Target:  5'- cGGCGAUaUCGUcCGUGGCggaUCUucuCAGCa -3'
miRNA:   3'- -CUGCUGcAGUA-GCAUCGa--AGAu--GUCG- -5'
9734 3' -49 NC_002577.1 + 84726 0.72 0.945808
Target:  5'- uGCGGuCGUCAUUGgcGUUUCUGC-GCg -3'
miRNA:   3'- cUGCU-GCAGUAGCauCGAAGAUGuCG- -5'
9734 3' -49 NC_002577.1 + 110610 0.73 0.91972
Target:  5'- --aGAUuaacucCAUCGUGGCUUCUAUAGCu -3'
miRNA:   3'- cugCUGca----GUAGCAUCGAAGAUGUCG- -5'
9734 3' -49 NC_002577.1 + 77943 1.13 0.009382
Target:  5'- uGACGACGUCAUCGUAGCUUCUACAGCu -3'
miRNA:   3'- -CUGCUGCAGUAGCAUCGAAGAUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.