Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9734 | 3' | -49 | NC_002577.1 | + | 77943 | 1.13 | 0.009382 |
Target: 5'- uGACGACGUCAUCGUAGCUUCUACAGCu -3' miRNA: 3'- -CUGCUGCAGUAGCAUCGAAGAUGUCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 110610 | 0.73 | 0.91972 |
Target: 5'- --aGAUuaacucCAUCGUGGCUUCUAUAGCu -3' miRNA: 3'- cugCUGca----GUAGCAUCGAAGAUGUCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 84726 | 0.72 | 0.945808 |
Target: 5'- uGCGGuCGUCAUUGgcGUUUCUGC-GCg -3' miRNA: 3'- cUGCU-GCAGUAGCauCGAAGAUGuCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 115997 | 0.69 | 0.990279 |
Target: 5'- cGGCGAUaUCGUcCGUGGCggaUCUucuCAGCa -3' miRNA: 3'- -CUGCUGcAGUA-GCAUCGa--AGAu--GUCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 52286 | 0.69 | 0.991517 |
Target: 5'- cGCGGCGUCgGUCGUuGCcUCUGCGuaucGCu -3' miRNA: 3'- cUGCUGCAG-UAGCAuCGaAGAUGU----CG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 161496 | 0.68 | 0.992626 |
Target: 5'- cGCGAgGUuaugacCGUCGUAGCUagaUCgggGCGGCc -3' miRNA: 3'- cUGCUgCA------GUAGCAUCGA---AGa--UGUCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 145660 | 0.68 | 0.993617 |
Target: 5'- -uCGACGUCGUCGUAaauuaauGCauuccccuucgcugCUACAGCc -3' miRNA: 3'- cuGCUGCAGUAGCAU-------CGaa------------GAUGUCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 68036 | 0.68 | 0.995204 |
Target: 5'- uGCGGCaggCG-CGUGGCUgugcaugUCUACGGCg -3' miRNA: 3'- cUGCUGca-GUaGCAUCGA-------AGAUGUCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 137592 | 0.67 | 0.998291 |
Target: 5'- cGAgGGgGUCGUggCGgcGCUUCUGC-GCg -3' miRNA: 3'- -CUgCUgCAGUA--GCauCGAAGAUGuCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 159745 | 0.67 | 0.998291 |
Target: 5'- cGAgGGgGUCGUggCGgcGCUUCUGC-GCg -3' miRNA: 3'- -CUgCUgCAGUA--GCauCGAAGAUGuCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 45936 | 0.66 | 0.998583 |
Target: 5'- uGCGAUGUCGUCcauguugcGUauGGCUUugcccaucaCUACGGCg -3' miRNA: 3'- cUGCUGCAGUAG--------CA--UCGAA---------GAUGUCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 80900 | 0.66 | 0.998831 |
Target: 5'- -uUGGCGUCucUCGc-GC-UCUGCAGCg -3' miRNA: 3'- cuGCUGCAGu-AGCauCGaAGAUGUCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 161611 | 0.66 | 0.999367 |
Target: 5'- cGCGACcuugUAUCGgacguuGCUUCcGCAGCa -3' miRNA: 3'- cUGCUGca--GUAGCau----CGAAGaUGUCG- -5' |
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9734 | 3' | -49 | NC_002577.1 | + | 153126 | 0.66 | 0.999367 |
Target: 5'- cGACGACGUUAg---GGUUg--GCAGCg -3' miRNA: 3'- -CUGCUGCAGUagcaUCGAagaUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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