miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9734 5' -55.5 NC_002577.1 + 126962 0.66 0.940487
Target:  5'- gCGUGGGggGGggGgGAGG-CCugAa- -3'
miRNA:   3'- gGCGCCCa-UCuuCgCUCCuGGugUag -5'
9734 5' -55.5 NC_002577.1 + 6651 0.66 0.940486
Target:  5'- gCGUGGGggGGggGgGAGG-CCugAa- -3'
miRNA:   3'- gGCGCCCa-UCuuCgCUCCuGGugUag -5'
9734 5' -55.5 NC_002577.1 + 153721 0.66 0.935737
Target:  5'- gUGUGGGUGGGuGGCGAaGGugCugAg- -3'
miRNA:   3'- gGCGCCCAUCU-UCGCU-CCugGugUag -5'
9734 5' -55.5 NC_002577.1 + 122748 0.66 0.934267
Target:  5'- cUCGCGGGUccGGAaccgucggacgucgAGgGAGGacGCCcCAUCg -3'
miRNA:   3'- -GGCGCCCA--UCU--------------UCgCUCC--UGGuGUAG- -5'
9734 5' -55.5 NC_002577.1 + 137327 0.66 0.930754
Target:  5'- gCCgGCGGGUcGAGG-GaAGGGCC-CGUCc -3'
miRNA:   3'- -GG-CGCCCAuCUUCgC-UCCUGGuGUAG- -5'
9734 5' -55.5 NC_002577.1 + 160011 0.66 0.930754
Target:  5'- gCCgGCGGGUcGAGG-GaAGGGCC-CGUCc -3'
miRNA:   3'- -GG-CGCCCAuCUUCgC-UCCUGGuGUAG- -5'
9734 5' -55.5 NC_002577.1 + 133400 0.66 0.930242
Target:  5'- cCCGCGGGcugagugcaccugUGGcGGCGGGaGGCUGCGg- -3'
miRNA:   3'- -GGCGCCC-------------AUCuUCGCUC-CUGGUGUag -5'
9734 5' -55.5 NC_002577.1 + 214 0.66 0.930242
Target:  5'- cCCGCGGGcugagugcaccugUGGcGGCGGGaGGCUGCGg- -3'
miRNA:   3'- -GGCGCCC-------------AUCuUCGCUC-CUGGUGUag -5'
9734 5' -55.5 NC_002577.1 + 129736 0.66 0.925535
Target:  5'- aUGUGGGggggGGggGCGggaAGGAUaACGUCu -3'
miRNA:   3'- gGCGCCCa---UCuuCGC---UCCUGgUGUAG- -5'
9734 5' -55.5 NC_002577.1 + 154851 0.66 0.925535
Target:  5'- aUCGgGGGggggggGGggGgGGGGGCgCGgGUCg -3'
miRNA:   3'- -GGCgCCCa-----UCuuCgCUCCUG-GUgUAG- -5'
9734 5' -55.5 NC_002577.1 + 96906 0.66 0.925535
Target:  5'- -aGCGGG-AGGAGCGgcaauAGGugCAUAa- -3'
miRNA:   3'- ggCGCCCaUCUUCGC-----UCCugGUGUag -5'
9734 5' -55.5 NC_002577.1 + 4118 0.66 0.925535
Target:  5'- gUGCGGGUAGguGgGAGcauaACCACAa- -3'
miRNA:   3'- gGCGCCCAUCuuCgCUCc---UGGUGUag -5'
9734 5' -55.5 NC_002577.1 + 3051 0.66 0.925535
Target:  5'- gCCGaGGGUAGgcGCaGAGGAaaUCGCgGUCg -3'
miRNA:   3'- -GGCgCCCAUCuuCG-CUCCU--GGUG-UAG- -5'
9734 5' -55.5 NC_002577.1 + 130563 0.66 0.925535
Target:  5'- gCCGaGGGUAGgcGCaGAGGAaaUCGCgGUCg -3'
miRNA:   3'- -GGCgCCCAUCuuCG-CUCCU--GGUG-UAG- -5'
9734 5' -55.5 NC_002577.1 + 129496 0.66 0.925535
Target:  5'- gUGCGGGUAGguGgGAGcauaACCACAa- -3'
miRNA:   3'- gGCGCCCAUCuuCgCUCc---UGGUGUag -5'
9734 5' -55.5 NC_002577.1 + 156282 0.67 0.920081
Target:  5'- cCCGCGGGUucggaacGggGCGAaccgagcccuauGGAuccCCGCAaaUCa -3'
miRNA:   3'- -GGCGCCCAu------CuuCGCU------------CCU---GGUGU--AG- -5'
9734 5' -55.5 NC_002577.1 + 141056 0.67 0.920081
Target:  5'- cCCGCGGGUucggaacGggGCGAaccgagcccuauGGAuccCCGCAaaUCa -3'
miRNA:   3'- -GGCGCCCAu------CuuCGCU------------CCU---GGUGU--AG- -5'
9734 5' -55.5 NC_002577.1 + 5442 0.67 0.914393
Target:  5'- aUGCGGGgcGAugAGCGGGuauuuaGGCCACGa- -3'
miRNA:   3'- gGCGCCCauCU--UCGCUC------CUGGUGUag -5'
9734 5' -55.5 NC_002577.1 + 128172 0.67 0.914393
Target:  5'- aUGCGGGgcGAugAGCGGGuauuuaGGCCACGa- -3'
miRNA:   3'- gGCGCCCauCU--UCGCUC------CUGGUGUag -5'
9734 5' -55.5 NC_002577.1 + 81263 0.67 0.907866
Target:  5'- gCCGCGGGcgUGGcgcAGCacGGGGACCguuuagauggucuACAUCg -3'
miRNA:   3'- -GGCGCCC--AUCu--UCG--CUCCUGG-------------UGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.